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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" article-type="research-article" dtd-version="1.2" xml:lang="en"><front><journal-meta><journal-id journal-id-type="publisher-id">Cell and Tissue Biology</journal-id><journal-title-group><journal-title xml:lang="en">Cell and Tissue Biology</journal-title><trans-title-group xml:lang="ru"><trans-title>Цитология</trans-title></trans-title-group></journal-title-group><issn publication-format="print">0041-3771</issn><issn publication-format="electronic">3034-6061</issn><publisher><publisher-name xml:lang="en">The Russian Academy of Sciences</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="publisher-id">669591</article-id><article-id pub-id-type="doi">10.31857/S0041377124030026</article-id><article-id pub-id-type="edn">PERHTF</article-id><article-categories><subj-group subj-group-type="toc-heading" xml:lang="en"><subject>Articles</subject></subj-group><subj-group subj-group-type="toc-heading" xml:lang="ru"><subject>Статьи</subject></subj-group><subj-group subj-group-type="article-type"><subject>Research Article</subject></subj-group></article-categories><title-group><article-title xml:lang="en">Genetically Encoded Biosensor HyPer as a Tool for Quantification of Intracellular Hydrogen Peroxide Concentrations</article-title><trans-title-group xml:lang="ru"><trans-title>Генетически кодируемый биосенсор HyPer как инструмент для количественного определения внутриклеточного уровня перекиси водорода</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Lyublinskaya</surname><given-names>O. G.</given-names></name><name xml:lang="ru"><surname>Люблинская</surname><given-names>О. Г.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>o.lyublinskaya@mail.ru</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Ivanova</surname><given-names>J. S.</given-names></name><name xml:lang="ru"><surname>Иванова</surname><given-names>Ю. С.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>o.lyublinskaya@mail.ru</email><xref ref-type="aff" rid="aff1"/></contrib></contrib-group><aff-alternatives id="aff1"><aff><institution xml:lang="en">Institute of Cytology RAS</institution></aff><aff><institution xml:lang="ru">Институт цитологии РАН</institution></aff></aff-alternatives><pub-date date-type="pub" iso-8601-date="2024-05-15" publication-format="electronic"><day>15</day><month>05</month><year>2024</year></pub-date><volume>66</volume><issue>3</issue><issue-title xml:lang="ru"/><fpage>223</fpage><lpage>233</lpage><history><date date-type="received" iso-8601-date="2025-02-27"><day>27</day><month>02</month><year>2025</year></date></history><permissions><copyright-statement xml:lang="en">Copyright ©; 2024, Russian Academy of Sciences</copyright-statement><copyright-statement xml:lang="ru">Copyright ©; 2024, Российская академия наук</copyright-statement><copyright-year>2024</copyright-year><copyright-holder xml:lang="en">Russian Academy of Sciences</copyright-holder><copyright-holder xml:lang="ru">Российская академия наук</copyright-holder></permissions><self-uri xlink:href="https://journals.eco-vector.com/0041-3771/article/view/669591">https://journals.eco-vector.com/0041-3771/article/view/669591</self-uri><abstract xml:lang="en"><p>This mini-review systematizes information on methods for quantitative assessment of intracellular hydrogen peroxide concentration based on the use of a genetically encoded peroxide sensor HyPer. Two approaches are being considered: 1) calibration of the biosensor using exogenous hydrogen peroxide, based on assessing the rate of peroxide penetration into cells and intracellular peroxidase activity; 2) direct determination of the intracellular peroxide content, based on measuring the level of oxidation of the biosensor, the oxidation reaction constant and the reduction reaction constant of HyPer in the cells. The use of these methods makes it possible to solve a wide range of tasks in cellular redox biology — to determine the range of physiological and damaging concentrations of hydrogen peroxide in cells, to evaluate the effectiveness of the antioxidant defense system in various cellular compartments under conditions of oxidative stress, to determine the contribution of various enzymatic systems to the peroxidase activity of cells, and to characterize antioxidant defense systems in various biological contexts (in the process of cellular senescence, differentiation, reprogramming, during the development of pathologies). The described methods can be adapted for other genetically encoded hydrogen peroxide biosensors.</p></abstract><trans-abstract xml:lang="ru"><p>В настоящем мини-обзоре систематизирована информация о методах количественной оценки внутриклеточной концентрации перекиси водорода, основанных на использовании генетически кодируемого сенсора пероксида HyPer. Рассматриваются два подхода: 1) градуировка биосенсора с использованием экзогенной перекиси водорода, основанная на оценке скорости проникновения пероксида в клетки и внутриклеточной пероксидазной активности; 2) прямое определение внутриклеточного содержания пероксида, основанное на измерении уровня окисления биосенсора, константы реакции окисления и константы реакции восстановления HyPer в клетках. Применение этих методов позволяет решать широкий спектр задач клеточной редокс-биологии — ранжировать диапазон физиологических и повреждающих концентраций перекиси водорода в клетках, оценивать эффективность системы антиоксидантной защиты в различных клеточных компартментах в условиях окислительного стресса, определять вклад различных ферментативных систем в пероксидазную активность клеток и изучать особенности систем антиоксидантной защиты в различных биологических контекстах (в процессе клеточного старения, дифференцировки, репрограммирования, при развитии патологий). Описанные методы могут быть адаптированы для других генетически-кодируемых биосенсоров перекиси водорода.</p></trans-abstract><kwd-group xml:lang="en"><kwd>hydrogen peroxide</kwd><kwd>antioxidant defense</kwd><kwd>peroxidase activity</kwd><kwd>genetically encoded biosensors</kwd><kwd>HyPer</kwd></kwd-group><kwd-group xml:lang="ru"><kwd>перекись водорода</kwd><kwd>антиоксидантная защита</kwd><kwd>пероксидазная активность</kwd><kwd>генетически кодируемые биосенсоры</kwd><kwd>HyPer</kwd></kwd-group><funding-group><award-group><funding-source><institution-wrap><institution xml:lang="ru">Российский Научный Фонд</institution></institution-wrap><institution-wrap><institution xml:lang="en">Russian Science Foundation</institution></institution-wrap></funding-source><award-id>21-74-20178</award-id></award-group></funding-group></article-meta></front><body></body><back><ref-list><ref id="B1"><label>1.</label><mixed-citation>Antunes F., Cadenas E. 2000. Estimation of H2O2 gradients across biomembranes. FEBS Lett. V. 475. P. 121.</mixed-citation></ref><ref id="B2"><label>2.</label><mixed-citation>Belousov V. V., Fradkov A. F., Lukyanov K. A., Staroverov D. B., Shakhbazov K. S., Terskikh A. V., Lukyanov S. A. 2006. Genetically encoded fluorescent indicator for intracellular hydrogen peroxide. Nat. Methods V. 3. P. 281.</mixed-citation></ref><ref id="B3"><label>3.</label><mixed-citation>Bilan D. S., Belousov V. V. 2016. HyPer family probes: state of the art. Antioxidants Redox Signal. V. 24. P. 731.</mixed-citation></ref><ref id="B4"><label>4.</label><mixed-citation>Bilan D. S., Pase L., Joosen L., Gorokhovatsky A. Y., Ermakova Y. G., Gadella T. W., Grabher C., Schultz C., Lukyanov S., Belousov V. V. 2013. HyPer-3: a genetically encoded H2O2 probe with improved performance for ratiometric and fluorescence lifetime imaging. ACS Chem. Biol. V. 8. P. 535.</mixed-citation></ref><ref id="B5"><label>5.</label><mixed-citation>Brito P. M., Antunes F. 2014. Estimation of kinetic parameters related to biochemical interactions between hydrogen peroxide and signal transduction proteins. Front. Chem. V. 2. P. 82.</mixed-citation></ref><ref id="B6"><label>6.</label><mixed-citation>Huang B. K., Sikes H. D. 2014. Quantifying intracellular hydrogen peroxide perturbations in terms of concentration. Redox Biol. V. 2. P. 955.</mixed-citation></ref><ref id="B7"><label>7.</label><mixed-citation>Huang B. K., Stein K. T., Sikes H. D. 2016. Modulating and measuring intracellular H2O2 using genetically encoded tools to study its toxicity to human cells. ACS Synth. Biol. V. 5. P. 1389.</mixed-citation></ref><ref id="B8"><label>8.</label><mixed-citation>Ivanova J., Guriev N., Pugovkina N., Lyublinskaya O. 2023. Inhibition of thioredoxin reductase activity reduces the antioxidant defense capacity of human pluripotent stem cells under conditions of mild but not severe oxidative stress. Biochem. Biophys. Res. Commun. V. 642. P. 137.</mixed-citation></ref><ref id="B9"><label>9.</label><mixed-citation>Lee C., Lee S. M., Mukhopadhyay P., Kim S. J., Lee S. C., Ahn W. S., Yu M. H., Storz G., Ryu S. E. 2004. Redox regulation of OxyR requires specific disulfide bond formation involving a rapid kinetic reaction path. Nat. Struct. Mol. Biol. V. 11. P. 1179.</mixed-citation></ref><ref id="B10"><label>10.</label><mixed-citation>Lim J., Langford T., Huang B., Deen W., Sikes H. 2016. A reaction-diffusion model of cytosolic hydrogen peroxide. Free Radic. Biol. Med. V. 90. P. 85.</mixed-citation></ref><ref id="B11"><label>11.</label><mixed-citation>Lyublinskaya O. G., Antonov S. A., Gorokhovtsev S. G., Pugovkina N. A., Kornienko J. S., Ivanova J. S., Shatrova A. N., Aksenov N. D., Zenin V. V., Nikolsky N. N. 2018. Flow cytometric HyPer-based assay for hydrogen peroxide. Free Radic. Biol. Med. V. 128 P. 40.</mixed-citation></ref><ref id="B12"><label>12.</label><mixed-citation>Lyublinskaya O., Antunes F. 2019. Measuring intracellular concentration of hydrogen peroxide with the use of genetically encoded H2O2 biosensor HyPer. Redox Biol. V. 24: 101200.</mixed-citation></ref><ref id="B13"><label>13.</label><mixed-citation>Malinouski M., Zhou Y, Belousov V, Hatfield D, Gladyshev V. 2011. Hydrogen peroxide probes directed to different cellular compartments. PLoS One. V. 6: e14564.</mixed-citation></ref><ref id="B14"><label>14.</label><mixed-citation>Meyer A. J., Dick T. P. 2010. Fluorescent protein-based redox probes. Antioxid. Redox Signal. V. 13. P. 621.</mixed-citation></ref><ref id="B15"><label>15.</label><mixed-citation>Milkovic L., Zarkovic N., Saso L. 2017. Controversy about pharmacological modulation of Nrf2 for cancer therapy. Redox Biol. V. 12. P. 727.</mixed-citation></ref><ref id="B16"><label>16.</label><mixed-citation>Mishina N., Bogdanova Y., Ermakova Y., Panova A., Kotova D., Bilan D., Steinhorn B., Arnér E., Michel T., Belousov V. 2019. Which antioxidant system shapes intracellular H2O2 gradients? Antioxid. Redox Signal. V. 31. P. 664.</mixed-citation></ref><ref id="B17"><label>17.</label><mixed-citation>Mishina N., Markvicheva K., Bilan D., Matlashov M., Shirmanova M., Liebl D., Schultz C., Lukyanov S., Belousov V. 2013. Visualization of intracellular hydrogen peroxide with HyPer, a genetically encoded fluorescent probe. Methods Enzymol. V. 526. P. 45.</mixed-citation></ref><ref id="B18"><label>18.</label><mixed-citation>Pak V. V., Ezeriņa D., Lyublinskaya O. G., Pedre B., Tyurin-Kuzmin P.A., Mishina N. M., Thauvin M., Young D., Wahni K., Martínez Gache S. A., Demidovich A. D., Ermakova Y. G., Maslova Y. D., Shokhina A. G., Eroglu E., et al. 2020. Ultrasensitive genetically encoded indicator for hydrogen peroxide identifies roles for the oxidant in cell migration and mitochondrial function. Cell Metab. V. 31. P. 642.</mixed-citation></ref><ref id="B19"><label>19.</label><mixed-citation>Sies H. 2021. Oxidative eustress: on constant alert for redox homeostasis. Redox Biol. V. 41: 101867.</mixed-citation></ref><ref id="B20"><label>20.</label><mixed-citation>Sies H., Berndt C., Jones D. P. 2017. Oxidative stress. Annu Rev. Biochem. V. 86. P. 715.</mixed-citation></ref><ref id="B21"><label>21.</label><mixed-citation>Sies H., Jones D. P. 2020. Reactive oxygen species (ROS) as pleiotropic physiological signalling agents. Nat. Rev. Mol. Cell Biol. V. 21. P. 363.</mixed-citation></ref><ref id="B22"><label>22.</label><mixed-citation>Sporn M. B., Liby K. T. 2012. NRF2 and cancer: the good, the bad and the importance of context. Nat. Rev. Cancer. V. 12. P. 564.</mixed-citation></ref><ref id="B23"><label>23.</label><mixed-citation>Zenin V., Ivanova J., Pugovkina N., Shatrova A., Aksenov N., Tyuryaeva I., Kirpichnikova K., Kuneev I., Zhuravlev A., Osyaeva E., Lyublinskaya E., Gazizova I., Guriev N., Lyublinskaya O. 2022. Resistance to H2O2-induced oxidative stress in human cells of different phenotypes. Redox Biol. V. 50: 102245.</mixed-citation></ref><ref id="B24"><label>24.</label><mixed-citation>Zheng M., Åslund F., Storz G. 1998. Activation of the OxyR transcription factor by reversible disulfide bond formation. Science. V. 279. P. 171 https://doi.org/10.1007/s10561-022-10011-x</mixed-citation></ref></ref-list></back></article>
