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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" article-type="research-article" dtd-version="1.2" xml:lang="en"><front><journal-meta><journal-id journal-id-type="publisher-id">Advances in Current Biology</journal-id><journal-title-group><journal-title xml:lang="en">Advances in Current Biology</journal-title><trans-title-group xml:lang="ru"><trans-title>Успехи современной биологии</trans-title></trans-title-group></journal-title-group><issn publication-format="print">0042-1324</issn><issn publication-format="electronic">3034-6347</issn><publisher><publisher-name xml:lang="en">The Russian Academy of Sciences</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="publisher-id">690975</article-id><article-id pub-id-type="doi">10.31857/S0042132425030016</article-id><article-id pub-id-type="edn">hoamxy</article-id><article-categories><subj-group subj-group-type="toc-heading" xml:lang="en"><subject>Articles</subject></subj-group><subj-group subj-group-type="toc-heading" xml:lang="ru"><subject>Статьи</subject></subj-group><subj-group subj-group-type="article-type"><subject>Research Article</subject></subj-group></article-categories><title-group><article-title xml:lang="en">Pathogenetic predictors of complications of the new coronavirus infection SARS-CoV-2</article-title><trans-title-group xml:lang="ru"><trans-title>Патогенетические предикторы осложнений новой коронавирусной инфекции SARS-COV-2</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Chepur</surname><given-names>S. V.</given-names></name><name xml:lang="ru"><surname>Чепур</surname><given-names>С. В.</given-names></name></name-alternatives><email>gniiivm_2@mil.ru</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Pluzhnikov</surname><given-names>N. N.</given-names></name><name xml:lang="ru"><surname>Плужников</surname><given-names>Н. Н.</given-names></name></name-alternatives><email>gniiivm_2@mil.ru</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Chubar</surname><given-names>O. V.</given-names></name><name xml:lang="ru"><surname>Чубарь</surname><given-names>О. В.</given-names></name></name-alternatives><email>gniiivm_2@mil.ru</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Bakulina</surname><given-names>L. S.</given-names></name><name xml:lang="ru"><surname>Бакулина</surname><given-names>Л. С.</given-names></name></name-alternatives><email>gniiivm_2@mil.ru</email><xref ref-type="aff" rid="aff2"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Litvinenko</surname><given-names>I. V.</given-names></name><name xml:lang="ru"><surname>Литвиненко</surname><given-names>И. В.</given-names></name></name-alternatives><email>gniiivm_2@mil.ru</email><xref ref-type="aff" rid="aff3"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Tjunin</surname><given-names>M. A.</given-names></name><name xml:lang="ru"><surname>Тюнин</surname><given-names>М. А.</given-names></name></name-alternatives><email>gniiivm_2@mil.ru</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Mjasnikova</surname><given-names>I. A.</given-names></name><name xml:lang="ru"><surname>Мясникова</surname><given-names>И. А.</given-names></name></name-alternatives><email>gniiivm_2@mil.ru</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Pugach</surname><given-names>V. A.</given-names></name><name xml:lang="ru"><surname>Пугач</surname><given-names>В. А.</given-names></name></name-alternatives><email>gniiivm_2@mil.ru</email><xref ref-type="aff" rid="aff1"/></contrib></contrib-group><aff-alternatives id="aff1"><aff><institution xml:lang="en">State Scientific Research Testing Institute of Military Medicine</institution></aff><aff><institution xml:lang="ru">Государственный научно-исследовательский испытательный институт военной медицины Минобороны России</institution></aff></aff-alternatives><aff-alternatives id="aff2"><aff><institution xml:lang="en">Burdenko Voronezh State Medical University</institution></aff><aff><institution xml:lang="ru">Воронежская государственная медицинская академия им. академика Н.Н. Бурденко Минздрава России</institution></aff></aff-alternatives><aff-alternatives id="aff3"><aff><institution xml:lang="en">Kirov Military Medical Academy</institution></aff><aff><institution xml:lang="ru">Военно-медицинская академия им. С.М. Кирова Минобороны России</institution></aff></aff-alternatives><pub-date date-type="pub" iso-8601-date="2025-06-15" publication-format="electronic"><day>15</day><month>06</month><year>2025</year></pub-date><volume>145</volume><issue>3</issue><issue-title xml:lang="en">VOL 145, NO3 (2025)</issue-title><issue-title xml:lang="ru">ТОМ 145, №3 (2025)</issue-title><fpage>193</fpage><lpage>215</lpage><history><date date-type="received" iso-8601-date="2025-09-21"><day>21</day><month>09</month><year>2025</year></date></history><permissions><copyright-statement xml:lang="en">Copyright ©; 2025, Russian Academy of Sciences</copyright-statement><copyright-statement xml:lang="ru">Copyright ©; 2025, Российская академия наук</copyright-statement><copyright-year>2025</copyright-year><copyright-holder xml:lang="en">Russian Academy of Sciences</copyright-holder><copyright-holder xml:lang="ru">Российская академия наук</copyright-holder></permissions><self-uri xlink:href="https://journals.eco-vector.com/0042-1324/article/view/690975">https://journals.eco-vector.com/0042-1324/article/view/690975</self-uri><abstract xml:lang="en"><p>The pathological processes contributing to local (at the site of invasion) and systemic (thrombotic and fibrotic manifestations) complications of the new coronavirus infection are assessed. The features of virus internalization into cells, S-protein-dependent biochemical processes that form inflammatory and barrier reactions are analyzed. When studying the options for evading the virus from the immune control systems, attention is paid to the uncoupling of phagocytosis from lytic processes compartmentalized in lysosomes during the penetration of SARS-CoV-2 into cells, as well as to the multilevel suppression of the interferon response. COVID-19 is a powerful stress factor and is associated with an increase in cortisol, catecholamines and lactate in the blood. Under hypoxic conditions, deviations in the course of metabolic processes and the reception of signaling molecules are traced. The redistribution of ionized iron in the progression of the viral process and the formation of its complications is traced. An important role in the formation of cellular damage and tissue structure reorganization is played by the systemic inflammatory response and immunothrombosis, associated with the formation of extracellular neutrophil traps, as a form of apoptotic cell death. The significance of DNA methylation, the appearance of mobile genetic elements and non-coding RNA is estimated. The formation of structural changes is largely associated with fibrosis, realized in particular through the virus-activated epithelial-mesenchymal transition, local and systemic correction of which will reduce the risk of complications of the infectious process.</p></abstract><trans-abstract xml:lang="ru"><p>Оценены патологические процессы, способствующие локальным (в месте инвазии) и системным (тромботические и фибротические проявления) осложнениям новой коронавирусной инфекции. Проанализированы особенности интернализации вируса в клетки, S-протеин-зависимые биохимические процессы, формирующие воспалительные и барьерные реакции. При исследовании вариантов уклонения вируса от систем иммунологического контроля обращено внимание на раз- общение фагоцитоза с литическими процессами, компартментализованными в лизосомах, при проникновении SARS-CoV-2 в клетки, а также на разноуровневое подавление интерферонового ответа. COVID-19 выступает мощным стрессогенным фактором, что сопряжено с нарастанием в крови кортизола, катехоламинов и лактата. В условиях гипоксии отмечены отклонения в протекании метаболических процессов и рецепции сигнальных молекул. Прослежено перераспределение ионизированного железа в прогрессии вирусного процесса и формировании его осложнений. Важную роль в формировании клеточных повреждений и перестроек структуры тканей играет системная воспалительная реакция и иммунотромбоз, сопряженный с формированием внеклеточных нейтрофильных ловушек, как формы апоптотической гибели клеток. Оценено значение метилирования ДНК, появления мобильных генетических элементов и некодирующих РНК. Формирование структурных изменений во многом сопряжено с фиброзированием, реализуемым, в частности, посредством активируемого вирусом эпителиально-мезенхимального перехода, локальная и системная коррекция которого снизит риск осложнений инфекционного процесса.</p></trans-abstract><kwd-group xml:lang="en"><kwd>SARS-CoV-2</kwd><kwd>SARS-CoV-2</kwd><kwd>complications</kwd><kwd>oxidative stress</kwd><kwd>cytokine storm</kwd><kwd>epigenetic regulation</kwd><kwd>epithelial</kwd><kwd>mesenchymal transition</kwd></kwd-group><kwd-group xml:lang="ru"><kwd>осложнения</kwd><kwd>оксидативный стресс</kwd><kwd>цитокиновый шторм</kwd><kwd>эпигенетическая регуляция</kwd><kwd>эпителиально-мезенхимальный переход</kwd></kwd-group><funding-group/></article-meta></front><body></body><back><ref-list><ref id="B1"><label>1.</label><mixed-citation>Андрусишина И.Н., Важничая Е.М., Донченко Е.А. и др. Средство для лечения перегрузки организма железом или гемахроматоза. Патент RU 2557959. Опуб. 27.07.2015 г.</mixed-citation></ref><ref id="B2"><label>2.</label><mixed-citation>Усова Е.В., Копанцева М.Р., Егоров В.И. и др. Белки SNAl1 и SNAl2 – транскрипционные мастер-регуляторы эпителиально-мезенхимального перехода // Патол. физиол. эксперим. терап. 2015. Т. 59 (2). С. 76–87.</mixed-citation></ref><ref id="B3"><label>3.</label><mixed-citation>Чепур С.В., Плужников Н.Н., Чубарь О.В. и др. Молочная кислота: динамика представлений о биологии лактата // Успехи соврем. биол. 2021. Т. 141 (3). С. 227–247.</mixed-citation></ref><ref id="B4"><label>4.</label><mixed-citation>Черняк Б.В., Попова Е.Н., Приходько А.С. и др. COVID-19 и окислительный стресс // Биохимия. 2020. Т. 85 (12). С. 1816–1828.</mixed-citation></ref><ref id="B5"><label>5.</label><mixed-citation>Шаварова Е.К., Казахмедов Э.Р., Алексеева М.В. и др. Роль антиоксидантной терапии у пациентов с новой коронавирусной инфекцией COVID-19 среднетяжелого и тяжелого течения // Инф. болезни. 2021. Т. 19 (1). С. 159–164.</mixed-citation></ref><ref id="B6"><label>6.</label><mixed-citation>Abdelrahman Z., Li M., Wang X. Comparative review of SARS-CoV-2, SARS-CoV, MERS-CoV, and influenza A respiratory viruses // Front. Immunol. 2020. V. 11. P. 552909.</mixed-citation></ref><ref id="B7"><label>7.</label><mixed-citation>Ackermann M., Anders H.-J., Bilyy R. et al. Patients with COVID-19: in the dark-NETs of neutrophils // Cell Death. Differ. 2021. V. 28 (11). P. 3125–3139.</mixed-citation></ref><ref id="B8"><label>8.</label><mixed-citation>Akaike T., Suga M., Maeda H. Free radicals in viral pathogenesis: molecular mechanisms involving superoxide and NO // Proc. Soc. Exp. Biol. Med. 1998. V. 217 (1). P. 64–73.</mixed-citation></ref><ref id="B9"><label>9.</label><mixed-citation>Al-Beltagi S., Preda C.A., Goulding L.V. et al. Thapsigargin is a broad-spectrum inhibitor of major human respiratory viruses: coronavirus, respiratory syncytial virus and influenza A virus // Viruses. 2021. V. 13 (2). P. 234.</mixed-citation></ref><ref id="B10"><label>10.</label><mixed-citation>Ali R.A., Gandhi A.A., Meng H. et al. Adenosine receptor agonism protects against NETosis and thrombosis in antiphospholipid syndrome // Nat. Commun. 2019. V. 10 (1). P. 1916.</mixed-citation></ref><ref id="B11"><label>11.</label><mixed-citation>Al-Kuraishy H.M., Al-Gareeb A.I., Qusti S. et al. COVID-19-induced dysautonomia: a mеnace of sympathetic storm // ASN Neuro. 2021. V. 13. P. 17590914211057635.</mixed-citation></ref><ref id="B12"><label>12.</label><mixed-citation>Amini A.A., Karimi J., Talebi S.S., Piri H. The association of COVID-19 and reactive oxygen species modulator 1 (ROMO 1) with oxidative stress // Chonnam. Med. J. 2022. V. 58 (1). P. 1–5.</mixed-citation></ref><ref id="B13"><label>13.</label><mixed-citation>Amiri-Dashatan N., Koushki M., Parsamanesh N., Chiti H. Serum cortisol concentration and COVID-19 severity: a systematic review and meta-analysis // J. Invest. Med. 2022. V. 70 (3). P. 766–772.</mixed-citation></ref><ref id="B14"><label>14.</label><mixed-citation>Anoop U.R., Verma K. Happy hypoxemia in COVID-19 – a neural hypothesis // ACS Chem. Neurosci. 2020. V. 11 (13). P. 1865–1867.</mixed-citation></ref><ref id="B15"><label>15.</label><mixed-citation>Aomatsu K., Arao T., Sugioka K. et al. TGF-β induces sustained upregulation of SNAI1 and SNAI2 through Smad and non-Smad pathways in a human corneal epithelial cell line // Invest. Ophthalmol. Vis. Sci. 2011. V. 52 (5). P. 2437–2443.</mixed-citation></ref><ref id="B16"><label>16.</label><mixed-citation>Archer S., Sharp W., Weir E.K. Differentiating COVID-19 pneumonia from acute respiratory distress syndrome and high altitude pulmonary edema: therapeutic implications // Circulation. 2020. V. 142 (2). P. 101–104.</mixed-citation></ref><ref id="B17"><label>17.</label><mixed-citation>Arman K., Dalloul Z., Bozgeyik E. Emerging role of microRNAs and long non-coding RNAs in COVID-19 with implications to therapeutics // Gene. 2023. V. 861. P. 147232.</mixed-citation></ref><ref id="B18"><label>18.</label><mixed-citation>Arrieta F., Martinez-Vaello V., Bengoa N. et al. Stress hyperglycemia and Osteocalcin in COVID-19 critically ill patients on artificial nutrition // Nutrients. 2021. V. 13 (9). P. 3010.</mixed-citation></ref><ref id="B19"><label>19.</label><mixed-citation>Assiri A.M., Alamaa T., Elenezi F. et al. Unveiling the clinical spectrum of post-COVID-19 conditions: assessment and recommended strategies // Cureus. 2024. V. 16 (1). P. e52827.</mixed-citation></ref><ref id="B20"><label>20.</label><mixed-citation>Atabati E., Dehghani-Samani A., Mortazavimoghaddam S.G. Association of COVID-19 and other viral infections with interstitial lung disease, pulmonary fibrosis, and pulmonary hypertension: a narrative review // Can. J. Respir. Ther. 2020. V. 56. P. 1–9.</mixed-citation></ref><ref id="B21"><label>21.</label><mixed-citation>Aydemir M.N., Aydemir H.B., Korkmaz E.M. et al. Computationally predicted SARS-CoV-2 encoded microRNAs target NFKB, JAK/STAT and TGFB signaling pathways // Gene Rep. 2021. V. 22. P. 101012.</mixed-citation></ref><ref id="B22"><label>22.</label><mixed-citation>Barabutis N. Unfolded protein response in lung health and disease // Front. Med. 2020. V. 7. P. 344.</mixed-citation></ref><ref id="B23"><label>23.</label><mixed-citation>Barbu E.A., Mendelsohn L., Samsel L., Thein S.L. Pro-inflammatory cytokines associate with NETosis during sickle cell vaso-occlusive crises // Cytokine. 2020. V. 127. P. 154933.</mixed-citation></ref><ref id="B24"><label>24.</label><mixed-citation>Barriere G., Fici P., Gallerani G. et al. Epithelial mesenchymal transition: a double-edged sword // Clin. Trans. Med. 2015. V. 4. P. 14.</mixed-citation></ref><ref id="B25"><label>25.</label><mixed-citation>Bartoszewski R., Dabrowski M., Jakiela B. et al. SARS-CoV-2 may regulate cellular responses through depletion of specific host miRNAs // Am. J. Physiol. Lung Cell Mol. Physiol. 2020. V. 319 (3). P. L444–L455.</mixed-citation></ref><ref id="B26"><label>26.</label><mixed-citation>Battistelli C., Diederich M., Keane T.J. et al. Editorial: Molecular mechanisms and new therapeutic targets in epithelial to mesenchymal transition (EMT) and fibrosis // Front. Pharmacol. 2020. V. 10. P. 1556.</mixed-citation></ref><ref id="B27"><label>27.</label><mixed-citation>Baum J., Duffy H.S. Fibroblasts and myofibroblasts: what are we talking about? // J. Cardiovasc. Pharmacol. 2011. V. 57 (4). P. 376–379.</mixed-citation></ref><ref id="B28"><label>28.</label><mixed-citation>Bektemur G., Bozali K., Colak S. et al. Oxidative stress, DNA damage, and inflammation in COVID-19 patients // North Clin. Istanb. 2023. V. 10 (3). P. 335–340.</mixed-citation></ref><ref id="B29"><label>29.</label><mixed-citation>Beltrán-Garcia J., Osca-Verdegal R., Pallardo F. et al. Oxidative stress and inflammation in COVID-19-associated sepsis: the potential role of antioxidant therapy in avoiding disease progression // Antioxidants. 2020. V. 9 (10). P. 936.</mixed-citation></ref><ref id="B30"><label>30.</label><mixed-citation>Bergamaschi G., Borrelli de Andreis F., Aronico N. et al. Anemia in patients with COVID-19: pathogenesis and clinical significance // Clin. Exp. Med. 2021. V. 21 (2). P. 239–246.</mixed-citation></ref><ref id="B31"><label>31.</label><mixed-citation>Berger J.M., Singh P., Khrimian L. et al. Mediation of the acute stress response by the skeleton // Cell Metab. 2019. V. 30 (5). P. 890–902.</mixed-citation></ref><ref id="B32"><label>32.</label><mixed-citation>Bohr C., Hasselbalch K., Krogh A.S. Uber einen in biologischer Beziehung wichtigen Einfluβ, den die Kohlensäurespannung des blutes auf dessen Sauerstoffbindung übt // Skand. Arch. Physiol. 1904. V. 16 (2). P. 402–412.</mixed-citation></ref><ref id="B33"><label>33.</label><mixed-citation>Borges L., Pithon-Curi T., Curi R., Hatanaka E. COVID-19 and neutrophils: the relationship between hyperinflammation and neutrophil extracellular traps // Mediators Inflamm. 2020. V. 2020. P. 8829674.</mixed-citation></ref><ref id="B34"><label>34.</label><mixed-citation>Borretzen A., Gravdal K., Haukaas S.A. et al. FOXC2 expression and epithelial-mesenchymal phenotypes are associated with castration resistance, metastasis and survival in prostate cancer // J. Pathol. Clin. Res. 2019. V. 5 (4). P. 272–286.</mixed-citation></ref><ref id="B35"><label>35.</label><mixed-citation>Brown C.J., Ballabio A., Rupert J.I. et al. A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome // Nature. 1991. V. 349 (6304). P. 38–44.</mixed-citation></ref><ref id="B36"><label>36.</label><mixed-citation>Burnham E.L., Janssen W.J., Riches D.W.H. et al. The fibroproliferative response in acute respiratory distress syndrome: mechanism and clinical significance // Eur. Respir. J. 2014. V. 43 (1). P. 276–285.</mixed-citation></ref><ref id="B37"><label>37.</label><mixed-citation>Busana M., Gasperetti A., Giosa L. et al. Prevalence and outcome of silent hypoxemia in COVID-19 // Minerva Anestesiol. 2021a. V. 87 (3). P. 325–333.</mixed-citation></ref><ref id="B38"><label>38.</label><mixed-citation>Busana M., Giosa L., Cressoni M. et al. The impact of ventilation-perfusion inequality in COVID-19: a computational model // J. Appl. Physiol. 2021b. V. 130 (3). P. 865–876.</mixed-citation></ref><ref id="B39"><label>39.</label><mixed-citation>Cabana-Dominguez J., Arenas C., Cormand B., Fernández-Castillo N. MiR-9, miR-153 and miR-124 are down-regulated to cocaine in a dopaminergic cell model and may contribute to cocaine dependence // Transl. Psychiatry. 2018. V. 8. P. 173.</mixed-citation></ref><ref id="B40"><label>40.</label><mixed-citation>Cabrera-Benitez N.E., Laffey J.G., Parotto M. et al. Mechanical ventilation-associated lung fibrosis in acute respiratory distress syndrome: a significant contributor to poor outcome // Anesthesiology. 2014. V. 121 (1). P. 189–198.</mixed-citation></ref><ref id="B41"><label>41.</label><mixed-citation>Cajanding R.J.M. Silent hypoxia in COVID-19 pneumonia: state of knowledge, pathophysiology, mechanisms, and management // AACN Adv. Crit. Care. 2022. V. 33 (2). P. 143–153.</mixed-citation></ref><ref id="B42"><label>42.</label><mixed-citation>Cameron M.J., Bermejo-Martin J.F., Danesh A. et al. Human immunopathogenesis of severe acute respiratory syndrome (SARS) // Virus Res. 2008. V. 133 (1). P. 13–19.</mixed-citation></ref><ref id="B43"><label>43.</label><mixed-citation>Cantuti-Castelvetri L., Ojha R., Pedro L.D. et al. Neuropilin-1 facilitates SARS-CoV-2 cell entry and infectivity // Science. 2020. V. 370 (6518). P. 856–860.</mixed-citation></ref><ref id="B44"><label>44.</label><mixed-citation>Capaldo C.T., Farkas A.E., Nusrat A. Epithelial adhesive junctions // F1000Prime Rep. 2014. V. 6. P. 1.</mixed-citation></ref><ref id="B45"><label>45.</label><mixed-citation>Carpene G., Onorato D., Nocini R. et al. Blood lactate concentration in COVID-19: a systematic literature review // Clin. Chem. Lab. Med. 2021. V. 60 (3). P. 332–337.</mixed-citation></ref><ref id="B46"><label>46.</label><mixed-citation>Carr A.C., Maggini S. Vitamin C and immune function // Nutrients. 2017. V. 9 (11). P. 1211.</mixed-citation></ref><ref id="B47"><label>47.</label><mixed-citation>Cavezzi A., Troiani E., Corrao S. COVID-19: hemoglobin, iron, and hypoxia beyond inflammation. A narrative review // Clin. Pract. 2020. V. 10 (2). P. 1271.</mixed-citation></ref><ref id="B48"><label>48.</label><mixed-citation>Channappanavar R., Perlman S. Pathogenic human coronavirus infections: causes and consequences of cytokine storm and immunopathology // Semin. Immunopathol. 2017. V. 39 (5). P. 529–539.</mixed-citation></ref><ref id="B49"><label>49.</label><mixed-citation>Chen D., Tang H., Jiang H. et al. ACPA alleviates bleomycin-induced pulmonary fibrosis by inhibiting TGF-β-Smad2/3 signaling-mediated lung fibroblast activation // Front. Pharmacol. 2022. V. 13. P. 835979.</mixed-citation></ref><ref id="B50"><label>50.</label><mixed-citation>Chen H.-C., Zhu Y.-T., Chen S.-Y., Tseng C.G. Wnt signaling induces epithelial-mesenchymal transition with proliferation in ARPE-19 cells upon loss of contact inhibition // Lab. Invest. 2012. V. 92 (5). P. 676–687.</mixed-citation></ref><ref id="B51"><label>51.</label><mixed-citation>Chen J., Fu X., Wang Y. et al. Oxidative modification of von Willebrand factor by neutrophil oxidants inhibits its cleavage by ADAMTS13 // Blood. 2010. V. 115 (3). P. 706–712.</mixed-citation></ref><ref id="B52"><label>52.</label><mixed-citation>Chen L., Alam A., Pac-Soo A. et al. Pretreatment with valproic acid alleviates pulmonary fibrosis through epithelial-mesenchymal transition inhibition in vitro and in vivo // Lab. Invest. 2021. V. 101 (9). P. 1166–1175.</mixed-citation></ref><ref id="B53"><label>53.</label><mixed-citation>Chen L., Zhu Y., Zhou J. et al. Luteolin alleviates epithelial-mesenchymal transformation induced by oxidative injury in ARPE-19 cell via Nrf2 and AKT/GSK-3β pathway // Oxid. Med. Cell Longev. 2022. V. 2022. P. 2265725.</mixed-citation></ref><ref id="B54"><label>54.</label><mixed-citation>Chen X., Wang K., Xing Y. et al. Coronavirus membrane-associated papain-like proteases induce autophagy through interacting with Beclin1 to negatively regulate antiviral innate immunity // Protein Cell. 2014. V. 5 (12). P. 912–927.</mixed-citation></ref><ref id="B55"><label>55.</label><mixed-citation>Chen X., Zhao B., Qu Y. et al. Detectable serum severe acute respiratory syndrome coronavirus 2 viral load (RNAemia) is closely correlated with drastically elevated interleukin 6 level in critically ill patients with coronavirus disease 2019 // Clin. Infect. Dis. 2020. V. 71 (8). P. 1937–1942.</mixed-citation></ref><ref id="B56"><label>56.</label><mixed-citation>Cheng F.-Y., Lee Y.-H., Hsu Y.-H. et al. Promising therapeutic effect of thapsigargin nanoparticles on chronic kidney disease through the activation of Nrf2 and FoxO1 // Aging (Albany NY). 2019. V. 11 (21). P. 9875–9892.</mixed-citation></ref><ref id="B57"><label>57.</label><mixed-citation>Cheng R.Z. A hallmark of COVID-19: cytokine storm/oxidative stress and its integrative mechanism // Orthomolecular Medicine News Service. 2022. URL: https://orthomolecular.org/resources/omns/v18n03.shtml (дата обращения: 09.11.2024)</mixed-citation></ref><ref id="B58"><label>58.</label><mixed-citation>Cherayil B.J. The role of iron in the immune response to bacterial infection // Immunol. Res. 2011. V. 50 (1). P. 1–9.</mixed-citation></ref><ref id="B59"><label>59.</label><mixed-citation>Cheresh P., Kim S.-J., Tulasiram S., Kamp D.W. Oxidative stress and pulmonary fibrosis // Biochim. Biophys. Acta. 2013. V. 1832 (7). P. 1028–1040.</mixed-citation></ref><ref id="B60"><label>60.</label><mixed-citation>Clausen T.M., Sandoval D.R., Spliid C.B. et al. SARS-CoV-2 infection depends on cellular heparan sulfate and ACE2 // Cell. 2020. V. 183 (4). P. 1043–1057.</mixed-citation></ref><ref id="B61"><label>61.</label><mixed-citation>Coco M., Buscemi A., Pennisi E. et al. Postural control and stress exposure in young men: changes in cortisol awakening response and blood lactate // Int. J. Environ. Res. Public Health. 2020. V. 17 (19). P. 7222.</mixed-citation></ref><ref id="B62"><label>62.</label><mixed-citation>Colston J.T., Chandrasekar B., Freeman G.L. A novel peroxide-induced calcium transient regulates interleukin-6 expression in cardiac-derived fibroblasts // J. Biol. Chem. 2002.V. 277 (26). P. 23477–23483.</mixed-citation></ref><ref id="B63"><label>63.</label><mixed-citation>Cottam E.M., Maier H.J., Manifava M. et al. Coronavirus nsp6 proteins generate autophagosomes from the endoplasmic reticulum via an omegasome intermediate // Autophagy. 2011. V. 7 (11). P. 1335–1347.</mixed-citation></ref><ref id="B64"><label>64.</label><mixed-citation>Cubillo E., Diaz-Lopez A., Cuevas E.P. et al. E47 and Id1 interplay in epithelial-mesenchymal transition // PLoS One. 2013. V. 8 (3). P. e59948.</mixed-citation></ref><ref id="B65"><label>65.</label><mixed-citation>Dai X., Xin Y., Xu W. et al. CBP-mediated Slug acetylation stabilizes Slug and promotes EMT and migration of breast cancer cells // Sci. China Life Sci. 2021. V. 64 (4). P. 563–574.</mixed-citation></ref><ref id="B66"><label>66.</label><mixed-citation>Daly J.L., Simonetti B., Klein K. et al. Neuropilin-1 is a host factor for SARS-CoV-2 infection // Science. 2020. V. 370 (6518). P. 861–865.</mixed-citation></ref><ref id="B67"><label>67.</label><mixed-citation>Das D.K., Engelman R.M., Liu X. et al. Oxygen-derived free radicals and hemolysis during open heart surgery // Mol. Cell Biochem. 1992. V. 111 (1–2). P. 77–86.</mixed-citation></ref><ref id="B68"><label>68.</label><mixed-citation>Daskou M., Abadi L.F., Gain C. et al. The role of the NRF2 pathway in the pathogenesis of viral respiratory infections // Pathogens. 2024. V. 13 (1). P. 39.</mixed-citation></ref><ref id="B69"><label>69.</label><mixed-citation>Davies J.P., Sivadas A., Keller K.R. et al. SARS-CoV-2 nonstructural proteins 3 and 4 tune the unfolded protein response // bioRxiv. 2023. V. 2023. P. 537917.</mixed-citation></ref><ref id="B70"><label>70.</label><mixed-citation>De Vuono S., Cianci P., Berisha S. et al. The PaCO<sub>2</sub>/FiO<sub>2</sub> ratio as outcome predictor in SARS-CoV-2 related pneumonia: a retrospective study // Acta Biomed. 2022. V. 93 (5). P. e202256.</mixed-citation></ref><ref id="B71"><label>71.</label><mixed-citation>Devaraj V., Bose B. Morphological state transition dynamics in EGF-induced epithelial to mesenchymal transition // J. Clin. Med. 2019. V. 8 (7). P. 911.</mixed-citation></ref><ref id="B72"><label>72.</label><mixed-citation>Dhont S., Derom E., Van Braeckel E. et al. The pathophysiology of “happy” hypoxemia in COVID-19 // Respir. Res. 2020. V. 21 (1). P. 198.</mixed-citation></ref><ref id="B73"><label>73.</label><mixed-citation>Di Gregorio J., Robuffo I., Spalletta S. et al. The epithelial-to-mesenchymal transition as a possible therapeutic target in fibrotic disorders // Front. Cell Dev. Biol. 2020. V. 8. P. 607483.</mixed-citation></ref><ref id="B74"><label>74.</label><mixed-citation>Dikic I., Elazar Z. Mechanism and medical implications of mammalian autophagy // Nat. Rev. Mol. Cell Biol. 2018. V. 19 (6). P. 349–364.</mixed-citation></ref><ref id="B75"><label>75.</label><mixed-citation>Dolhnikoff M., Duarte-Neto A.N., de Almeida Monteiro R.A. et al. Pathological evidence of pulmonary thrombotic pneumonia in severe COVID-19 // J. Thromb. Haemost. 2020. V. 18 (6). P. 1517–1519.</mixed-citation></ref><ref id="B76"><label>76.</label><mixed-citation>Dolskiy A.A., Gudymo A.S., Taranov O.S. et al. The tissue distribution of SARS-CoV-2 in transgenic mice with inducible ubiquitous expression of hACE2 // Front. Mol. Biosci. 2022. V. 8. P. 821506.</mixed-citation></ref><ref id="B77"><label>77.</label><mixed-citation>Dyer L.A., Patterson C. Development of the endothelium: an emphasis on heterogeneity // Semin. Thromb. Hemost. 2010. V. 36 (3). P. 227–235.</mixed-citation></ref><ref id="B78"><label>78.</label><mixed-citation>Ehsani S. COVID-19 and iron dysregulation: distant sequence similarity between hepcidin and the novel coronavirus spike glycoprotein // Biol. Direct. 2020. V. 15 (1). P. 19.</mixed-citation></ref><ref id="B79"><label>79.</label><mixed-citation>Elbarbary R.A., Lucas B.A., Maquat L.E. Retrotransposons as regulators of gene expression // Science. 2016. V. 351 (6274). P. aac7247.</mixed-citation></ref><ref id="B80"><label>80.</label><mixed-citation>Engreitz J.M., Sirokman K., McDonel P. et al. RNA-RNA interactions enable specific targeting of noncoding RNAs to nascent pre-mRNAs and chromatin sites // Cell. 2014. V. 159 (1). P. 188–199.</mixed-citation></ref><ref id="B81"><label>81.</label><mixed-citation>Estornut C., Milara J., Bayarri M.A. et al. Targeting oxidative stress as a therapeutic approach for idiopathic pulmonary fibrosis // Front. Pharmacol. 2022. V. 12. P. 794997.</mixed-citation></ref><ref id="B82"><label>82.</label><mixed-citation>Evans W.H., Martin P.E.M. Gap junctions: structure and function (Review) // Mol. Membr. Biol. 2002. V. 19 (2). P. 121–136.</mixed-citation></ref><ref id="B83"><label>83.</label><mixed-citation>Fan H., Yang F., Xiao Z. et al. Lactylation: novel epigenetic regulatory and therapeutic opportunities // Am. J. Physiol. Endocrinol. Metab. 2023. V. 324 (4). P. E330–E338.</mixed-citation></ref><ref id="B84"><label>84.</label><mixed-citation>Fan Q., Qiu M.T., Zhu Z. et al. Twist induces epithelial-mesenchymal transition in cervical carcinogenesis by regulating the TGF-β/Smad3 signaling pathway // Oncol. Rep. 2015. V. 34 (4). P. 1787–1794.</mixed-citation></ref><ref id="B85"><label>85.</label><mixed-citation>Fang J.S., Hultgren N.W., Hughes C.W. Regulation of partial reversible endothelial-to-mesenchymal transition in angiogenesis // Front. Cell Dev. Biol. 2021. V. 9. P. 702021.</mixed-citation></ref><ref id="B86"><label>86.</label><mixed-citation>Feschotte C. Transposable elements and the evolution of regulatory networks // Nat. Rev. Genet. 2008. V. 9 (5). P. 397–405.</mixed-citation></ref><ref id="B87"><label>87.</label><mixed-citation>Ferdousi M., Finn D.P. Stress-induced modulation of pain: role of the endogenous opioid system // Prog. Brain Res. 2018. V. 239. P. 121–177.</mixed-citation></ref><ref id="B88"><label>88.</label><mixed-citation>Ferrara J.L. Cytokine dysregulation as a mechanism of graft versus host disease // Curr. Opi. Immunol. 1993. V. 5 (5). P. 794–799.</mixed-citation></ref><ref id="B89"><label>89.</label><mixed-citation>Forrest M.P., Waite A.J., Martin-Rendon E., Blake D.J. Knockdown of human TCF4 affects multiple signaling pathways involved in cell survival, epithelial to mesenchymal transition and neuronal differentiation // PLoS One. 2013. V. 8 (8). P. e73169.</mixed-citation></ref><ref id="B90"><label>90.</label><mixed-citation>Förster C. Tight junctions and the modulation of barrier function in disease // Histochem. Cell Biol. 2008. V. 130 (1). P. 55–70.</mixed-citation></ref><ref id="B91"><label>91.</label><mixed-citation>Fouad L., Lafta F.M., Khashman B.M. Host`s DNA methylation alterations accompanying COVID-19 infection. A review article // Microb. Sci. Arch. 2023. V. 3 (3). P. 87–93.</mixed-citation></ref><ref id="B92"><label>92.</label><mixed-citation>Franke W.W., Grund C., Kuhn C., Jackson B.W. Formation of cytoskeletal elements during mouse embryogenesis. III. Primary mesenchymal cells and the first appearance of vimentin filaments // Differentiation. 1982. V. 23 (1). P. 43–59.</mixed-citation></ref><ref id="B93"><label>93.</label><mixed-citation>Fuchs E. Scratching the surface of skin development // Nature. 2007. V. 445 (7130). P. 834–842.</mixed-citation></ref><ref id="B94"><label>94.</label><mixed-citation>Fulzele S., Sahay B., Yusufu I. et al. COVID-19 virulence in aged patients might be impacted by the host cellular microRNAs abundance/profile // Aging Dis. 2020. V. 11 (3). P. 509–522.</mixed-citation></ref><ref id="B95"><label>95.</label><mixed-citation>Fung S.Y., Siu K.L., Lin H. et al. SARS-CoV-2 NSP13 helicase suppresses interferon signaling by perturbing JAK1 phosphorylation of STAT1 // Cell Biosci. 2022. V. 12 (1). P. 36.</mixed-citation></ref><ref id="B96"><label>96.</label><mixed-citation>Fung T.S., Liu D.X. Coronavirus infection, ER stress, apoptosis and innate immunity // Front. Microbiol. 2014. V. 5. P. 296.</mixed-citation></ref><ref id="B97"><label>97.</label><mixed-citation>Gairola S., Sinha A., Kaundal R. Linking NLRP3 inflammasome and pulmonary fibrosis: mechanistic insights and promising therapeutic avenues // Inflammopharmacology. 2024. V. 32 (1). P. 287–305.</mixed-citation></ref><ref id="B98"><label>98.</label><mixed-citation>Ganley I.G., Wong P.M., Gammoh N., Jiang X. Distinct autophagosomal-lysosomal fusion mechanism revealed by thapsigargin-induced autophagy arrest // Mol. Cell. 2011. V. 42 (6). P. 731–743.</mixed-citation></ref><ref id="B99"><label>99.</label><mixed-citation>Ganz T. Hepcidin and iron regulation, 10 years later // Blood. 2011. V. 117 (17). P. 4425–4433.</mixed-citation></ref><ref id="B100"><label>100.</label><mixed-citation>García-Sastre A., Biron C.A. Type I interferons and the virus-host relationship: a lesson in détente // Science. 2006. V. 312 (5775). P. 879–882.</mixed-citation></ref><ref id="B101"><label>101.</label><mixed-citation>Gassen N.C., Niemeyer D., Muth D. et al. SKP2 attenuates autophagy through Beclin1-ubiquitination and its inhibition reduces MERS-coronavirus infection // Nat. Commun. 2019. V. 10 (1). P. 5770.</mixed-citation></ref><ref id="B102"><label>102.</label><mixed-citation>Gassen N.C., Papies J., Bajaj T. et al. SARS-CoV-2-mediated dysregulation of metabolism and autophagy uncovers host-targeting antivirals // Nat. Commun. 2021. V. 12 (1). P. 3818.</mixed-citation></ref><ref id="B103"><label>103.</label><mixed-citation>Gelfand M.V., Hagan N., Tata A. et al. Neurpilin-1 functions as a VEGER2 co-receptor to guide developmental angiogenesis independent of ligand binding // Elife. 2014. V. 3. P. e03720.</mixed-citation></ref><ref id="B104"><label>104.</label><mixed-citation>George P.M., Wells A.U., Jenkins R.G. Pulmonary fibrosis and COVID-19: the potential role for antifibrotic therapy // Lancet Respir. Med. 2020. V. 8 (8). P. 807–815.</mixed-citation></ref><ref id="B105"><label>105.</label><mixed-citation>Glinka Y., Stoilova S., Mohammed N., Prudhomme G.J. Neuropillin-1 exerts co-receptor function for TGF-beta-1 on the membrane cancer cells and enhances responses to both latent and active TGF-beta // Carcinogenesis. 2011. V. 32 (4). P. 613–621.</mixed-citation></ref><ref id="B106"><label>106.</label><mixed-citation>Goel S., Saheb Sharif-Askari F., Saheb Sharif Askari N. et al. SARS-CoV-2 switches “on” MAPK and NF-κB signaling via the reduction of nuclear DUSP1 and DUCP5 expression // Front. Pharmacol. 2021. V. 12. P. 631879.</mixed-citation></ref><ref id="B107"><label>107.</label><mixed-citation>Gonzáles-Duarte A., Norcliffe-Kaufmann L. Is “happy hypoxia” in COVID-19 a disorder of autonomic interoception? A hypothesis // Clin. Auton. Res. 2020. V. 30 (4). P. 331–333.</mixed-citation></ref><ref id="B108"><label>108.</label><mixed-citation>Gould T.J., Vu T.T., Swystun L.L. et al. Neutrophil extracellular traps promote thrombin generation through platelet-dependent and platelet-independent mechanisms // Arterioscler. Thromb. Vasc. Biol. 2014. V. 34 (9). P. 1977–1984.</mixed-citation></ref><ref id="B109"><label>109.</label><mixed-citation>Greenburg G., Hay E.D. Epithelia suspended in collagen gels can lose polarity and express characteristics of migrating mesenchymal cells // L. Cell Biol. 1982. V. 95 (1). P. 333–339.</mixed-citation></ref><ref id="B110"><label>110.</label><mixed-citation>Gu W., Gan H., Ma Y. et al. The molecular mechanism of SARS-CoV-2 evading host antiviral innate immunity // Virol. J. 2022. V. 19 (1). P. 49.</mixed-citation></ref><ref id="B111"><label>111.</label><mixed-citation>Gubbi S., Nazari M.A., Taieb D. et al. Catecholamine physiology and its implications in patients with COID-19 // Lancet Diabet. Endocrinol. 2020. V. 8 (12). P. 978–986.</mixed-citation></ref><ref id="B112"><label>112.</label><mixed-citation>Gubernatorova E.O., Gorshkova E.A., Polinova A.I., Drutskaya M.S. IL-6: relevance for immunopathology of SARS-CoV-2 // Cyt. Growth Fact. Rev. 2020. V. 53. P. 13–24.</mixed-citation></ref><ref id="B113"><label>113.</label><mixed-citation>Gudowska-Sawczuk M., Mroczko B. The role of neuropilin-1 (NRP1) in SARS-CoV-2 infection: review // J. Clin. Med. 2021. V. 10 (13). P. 2772.</mixed-citation></ref><ref id="B114"><label>114.</label><mixed-citation>Guo J., Yang Z., Jia Q. et al. Pirfenidone inhibits epithelial-mesenchymal transition and pulmonary fibrosis in rat silicosis model // Toxicol. Lett. 2019. V. 300. P. 59–66.</mixed-citation></ref><ref id="B115"><label>115.</label><mixed-citation>Gupta Y., Maciorowski D., Medernach B. et al. Iron dysregulation in COVID-19 and reciprocal evolution of SARS-CoV-2: natura nihil frustra facit // J. Cell. Biochem. 2022. V. 123 (3). P. 601–619.</mixed-citation></ref><ref id="B116"><label>116.</label><mixed-citation>Haase V.H. Oxygen regulates epithelial-to-mesenchymal transition: insights into molecular mechanisms and relevance to disease // Kidney Int. 2009. V. 76 (5). P. 492–499.</mixed-citation></ref><ref id="B117"><label>117.</label><mixed-citation>Habib H.M., Ibrahim S., Zaim A., Ibrahim W.H. The role of iron in the pathogenesis of COVID-19 and possible treatment with lactoferrin and other iron chelators // Biomed. Pharmacother. 2021. V. 136. P. 111228.</mixed-citation></ref><ref id="B118"><label>118.</label><mixed-citation>Haller O., Kochs G., Weber F. The interferon response circuit: induction and suppression by pathogenic viruses // Virology. 2006. V. 344 (1). P. 119–130.</mixed-citation></ref><ref id="B119"><label>119.</label><mixed-citation>Han J., Weisbrod R.M., Shao D. et al. The redox mechanism for vascular barrier dysfunction associated with metabolic disorders: glutathionylation of Rac1 in endothelial cells // Redox Biol. 2016. V. 9. P. 306–319.</mixed-citation></ref><ref id="B120"><label>120.</label><mixed-citation>Han Y., Luo Y., Wang Y. et al. Hepatocyte growth factor increases the invasive potential of PC-3 human prostate cancer cells via an ERK/MAPK and Zeb-1 signaling pathway // Oncol. Lett. 2016. V. 11 (1). P. 753–759.</mixed-citation></ref><ref id="B121"><label>121.</label><mixed-citation>Hanrahan K., O`Neill A., Prencipe M. et al. The role of epithelial-mesenchymal transition drivers ZEB1 and ZEB2 in mediating docetaxel-resistant prostate cancer // Mol. Oncol. 2017. V. 11 (3). P. 251–265.</mixed-citation></ref><ref id="B122"><label>122.</label><mixed-citation>Hao W., Yu T.-T., Zuo D.-Z. et al. Stevioside attenuates bleomycin-induced pulmonary fibrosis by activating the Nrf2 pathway and inhibiting NF-κB and TGF-β1/Smad2/3 pathways // Exp. Lung Res. 2023. V. 49 (1). P. 205–219.</mixed-citation></ref><ref id="B123"><label>123.</label><mixed-citation>Hartwell K.A., Muir B., Reinhardt F. et al. The Spemann organizer gene, goosecoid, promotes tumor metastasis // PNAS USA. 2006. V. 103 (50). P. 18969–18974.</mixed-citation></ref><ref id="B124"><label>124.</label><mixed-citation>Hay E.D. Organization and fine structure of epithelium and mesenchyme in the developing chick embryo // Epithelial-mesenchymal interactions: Proceedings of the 18<sup>th</sup> Hahnemann Symposium / Ed. by Freischmajer R., Billingham R. Baltimore: Williams and Wilkins. Co, 1968. P. 31–55.</mixed-citation></ref><ref id="B125"><label>125.</label><mixed-citation>Henderson L.A., Canna S.W., Schulert G.S. et al. On the alert for cytokine storm: immunopathology in COVID-19 // Arthr. Rheumatol. 2020. V. (7). P. 1059–1063.</mixed-citation></ref><ref id="B126"><label>126.</label><mixed-citation>Henderson N.C., Rieder F., Wynn T.A. Fibrosis: from mechanisms to medicines // Nature. 2020. V. 587 (7835). P. 555–566.</mixed-citation></ref><ref id="B127"><label>127.</label><mixed-citation>Hennet T., Richter C., Peterhans E. Tumor necrosis factor-alpha induces superoxide anion generation in mitochondria of L929 cells // Biochem. J. 1993. V. 289 (Pt 2). P. 587–592.</mixed-citation></ref><ref id="B128"><label>128.</label><mixed-citation>Herrmann J., Mori V., Bates J.H.T., Suki B. Modeling lung perfusion abnormalities to explain early COVID-19 hypoxemia // Nat. Commun. 2020. V. 11 (1). P. 4883.</mixed-citation></ref><ref id="B129"><label>129.</label><mixed-citation>Hibbs J.B., Westenfelder C., Taintor R. et al. Evidence for cytokine-inducible nitric oxide synthesis from L-arginine in patients receiving interleukin-2 therapy // J. Clin. Invest. 1992. V. 89 (3). P. 867–877.</mixed-citation></ref><ref id="B130"><label>130.</label><mixed-citation>Hoffman M., Klein-Weber H., Schroeder S. et al. SARS-CoV-2 cell entry depends on ACE2 and TMPRSS2 and is blocked by a clinically proven protease inhibitor // Cell. 2020. V. 181 (2). P. 271–280.e8.</mixed-citation></ref><ref id="B131"><label>131.</label><mixed-citation>Hosseini A., Stojkov D., Fettrelet T. et al. Transcriptional insight of oxidative stress and extracellular traps in lung tissues of fatal COVID-19 cases // Int. J. Mol. Sci. 2023. V. 24 (3). P. 2646.</mixed-citation></ref><ref id="B132"><label>132.</label><mixed-citation>Hou P., Wang X., Wang H. et al. The OEF7a protein of SARS-CoV-2 initiates autophagy and limits autophagosome-lysosome fusion via degradation of SNAP29 to promote virus replication // Autophagy. 2023. V. 19 (2). P. 551–569.</mixed-citation></ref><ref id="B133"><label>133.</label><mixed-citation>Huang C., Wang Y., Li X. et al. Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China // Lancet. 2020. V. 395 (10223). P. 497–506.</mixed-citation></ref><ref id="B134"><label>134.</label><mixed-citation>Huang R., Xu M., Zhu H. et al. Biological activity-based modeling identifies antiviral leads against SARS-CoV-2 // Nat. Biotechnol. 2021. V. 39 (6). P. 747–753.</mixed-citation></ref><ref id="B135"><label>135.</label><mixed-citation>Huoman J., Sayyab S., Apostolou E. et al. Epigenetic rewiring of pathways related to odour perception in immune cells exposed to SARS-CoV-2 in vivo and in vitro // Epigenetics. 2022. V. 17 (13). P. 1875–1891.</mixed-citation></ref><ref id="B136"><label>136.</label><mixed-citation>Huoman J., Sayyab S., Apostolou E. et al. Mild SARS-CoV-2 infection modifies DNA methylation of peripheral blood mononuclear cells from COVID-19 convalescents // MedRxiv. ID: ppzbmed-10.1101.2021. 07.05.21260014.</mixed-citation></ref><ref id="B137"><label>137.</label><mixed-citation>Ibrahim Fouad G., R. Mousa M. The protective potential of alpha lipoic acid on amiodarone-induced pulmonary fibrosis and hepatic injury in rats // Mol. Cell. Biochem. 2021. V. 476 (9). P. 3433–3448.</mixed-citation></ref><ref id="B138"><label>138.</label><mixed-citation>Ihara H., Mitsuishi Y., Kato M. et al. Nintedanib inhibits epithelial-mesenchymal transition in A459 alveolar epithelial cells through regulation of the TGF-β/Smad pathway // Respir. Investig. 2020. V. 58 (4). P. 275–284.</mixed-citation></ref><ref id="B139"><label>139.</label><mixed-citation>Ito J., Sugimoto R., Nakaoka H. et al. Systematic identification and characterization of regulatory elements derived from human endogenous retroviruses // PLoS Genet. 2017. V. 13 (7). P. e1006883.</mixed-citation></ref><ref id="B140"><label>140.</label><mixed-citation>Ivanov A.V., Bartosch B., Isaguliants M.G. Oxidative stress in infection and consequent disease // Oxid. Med. Cell Longev. 2017. V. 2017. P. 3496043.</mixed-citation></ref><ref id="B141"><label>141.</label><mixed-citation>Jeon M.J., Kim W.G., Lim S. et al. Alpha lipoic acid inhibits proliferation and epithelial mesenchymal transition of thyroid cancer cells // Mol. Cell Endocrinol. 2016. V. 419. P. 113–123.</mixed-citation></ref><ref id="B142"><label>142.</label><mixed-citation>Jiang J.C., Upton K.R. Human transposons are an abundant supply of transcription factor binding sites and promoter activities in breast cancer cell lines // Mob. DNA. 2019. V. 10 (1). P. 16.</mixed-citation></ref><ref id="B143"><label>143.</label><mixed-citation>Jo M., Lester R.D., Montel V. et al. Reversibility of epithelial-mesenchymal transition (EMT) induced in breast cancer cells by activation of urokinase receptor-dependent cell signaling // J. Biol. Chem. 2009. V. 284 (34). P. 22825–22833.</mixed-citation></ref><ref id="B144"><label>144.</label><mixed-citation>Johnson R., Guigo R. The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs // RNA. 2014. V. 20 (7). P. 959–976.</mixed-citation></ref><ref id="B145"><label>145.</label><mixed-citation>Kalluri R., Neilson E.G. Epithelial-mesenchymal transition and its implications for fibrosis // J. Clin. Invest. 2003. V. 112 (12). P. 1776–1784.</mixed-citation></ref><ref id="B146"><label>146.</label><mixed-citation>Karakike E., Giamarellos-Bourboulis E.J., Kyprianou M. et al. Coronavirus disease 2019 as cause of viral sepsis: a systematic review and meta-analysis // Crit. Cara Med. 2021. V. 49 (12). P. 2042–2057.</mixed-citation></ref><ref id="B147"><label>147.</label><mixed-citation>Karla R.S., Kandimalla R. Engaging the spikes: heparan sulfate facilitates SARS-CoV-2 spike protein binding to ACE2 and potentiates viral infection // Sign. Transduct. Target Ther. 2021. V. 6 (1). P. 39.</mixed-citation></ref><ref id="B148"><label>148.</label><mixed-citation>Keller C., Böttcher-Friebertshäuser E., Lohoff M. TMPRSS2, a novel host-directed drug target against SARS-CoV-2 // Signal Transduct. Target Ther. 2022. V. 7 (1). P. 251.</mixed-citation></ref><ref id="B149"><label>149.</label><mixed-citation>Kennedy C.C., Brown E.E., Abutaleb N.O., Truskey G.A. Development and application of endothelial cells derived from pluripotent stem cells in microphysiological systems models // Front. Cardiovasc. Med. 2021. V. 8. P. 625016.</mixed-citation></ref><ref id="B150"><label>150.</label><mixed-citation>Khan P., Manna A., Saha S. et al. Aspirin inhibits epithelial-mesenchymal transition and migration of oncogenic K-ras-expressing non-small cell lung carcinoma cells by down-regulating E-cadherin repressor Slug // BMC Cancer. 2016. V. 16. P. 39.</mixed-citation></ref><ref id="B151"><label>151.</label><mixed-citation>Kharazmi A., Nielsen H., Rechnitzer C., Bendtzen K. Interleukin 6 primes human neutrophil and monocyte oxidative burst response // Immunol. Lett. 1989. V. 21 (2). P. 177–184.</mixed-citation></ref><ref id="B152"><label>152.</label><mixed-citation>Khomich O.A., Kochetkov S.N., Bartosch B., Ivanov A.V. Redox biology of respiratory viral unfections // Viruses. 2018. V. 10 (8). P. 392.</mixed-citation></ref><ref id="B153"><label>153.</label><mixed-citation>Kiesslich T., Pichler M., Neureiter D. Epigenetic control of epithelial-mesenchymal transition in human cancer // Mol. Clin. Oncol. 2013. V. 1 (1). P. 3–11.</mixed-citation></ref><ref id="B154"><label>154.</label><mixed-citation>Kim D.H., Xing T., Yang Z. et al. Epithelial mesenchymal transition in embryonic development, tissue repair and cancer: a comprehensive overview // J. Clin. Med. 2017. V. 7 (1). P. 1.</mixed-citation></ref><ref id="B155"><label>155.</label><mixed-citation>Kim H., Jun I., Yoon J.S. et al. Selective serotonin reuptake inhibitors facilitate ANO6 (TMEM16F) current activation and phosphatidylserine exposure // Pflüg. Arch. 2015. V. 467 (11). P. 2243–2256.</mixed-citation></ref><ref id="B156"><label>156.</label><mixed-citation>Koch B.F. SARS-CoV-2 and human retroelements: a case for molecular mimicry? // BMC Genom Data. 2022. V. 23 (1). P. 27.</mixed-citation></ref><ref id="B157"><label>157.</label><mixed-citation>Kobayashi S., Nishimura M., Yamomoto M. et al. Relationship between breathlessness and hypoxic and hypercapnic ventilatory response in patients with COPD // Eur. Respir. J. 1996. V. 9 (11). P. 2340–2345.</mixed-citation></ref><ref id="B158"><label>158.</label><mixed-citation>Kong D., Wang Z., Sarkar S.H. et al. Platelet-derived growth factor-D overexpression contributes to epithelial-mesenchymal transition of PC3 prostate cancer cells // Stem Cells. 2008. V. 26 (6). P. 1425–1435.</mixed-citation></ref><ref id="B159"><label>159.</label><mixed-citation>Kunzelmann K., Nilins B., Owsianik G. et al. Molecular functions of anoctamin 6 (TMEM16F): a chloride channel, cation channel, or phospholipid scramlase // Pflüg Arch. 2014. V. 466 (3). P. 407–414.</mixed-citation></ref><ref id="B160"><label>160.</label><mixed-citation>Kurt E., Bahadirli S. Prognostic value of blood gas lactate levels among COVID-19 patients who visited to emergency department // J. Health Sci. Med. 2021. V. 4 (4). P. 493–497.</mixed-citation></ref><ref id="B161"><label>161.</label><mixed-citation>Kusaczuk M., Bartoszewicz M., Cechowska-Pasko M. Phenylbutyric acid: simple structure – multiple effects // Curr. Pharm. Des. 2015. V. 21 (16). P. 2147–2166.</mixed-citation></ref><ref id="B162"><label>162.</label><mixed-citation>Kyuno D., Takasawa A., Kikuchi S. et al. Role of tight junctions in the epithelial-to-mesenchymal transition of cancer cells // Biochim. Biophys. Acta Biomembr. 2021. V. 1863 (3). P. 183503.</mixed-citation></ref><ref id="B163"><label>163.</label><mixed-citation>Lage S.L., Amaral E.P., Hilligan K.L. et al. Persistent oxidative stress and inflammasome activation in CD<sup>high</sup>CD16<sup>–</sup> monocites from COVID-19 patients // Front. Immunol. 2022. V. 12. P. 799558.</mixed-citation></ref><ref id="B164"><label>164.</label><mixed-citation>Lai X., Li Q., Wu F. et al. Epithelial-mesenchymal transition and metabolic switching in cancer: lessons from somatic cell reprogramming // Front. Cell Dev. Biol. 2020. V. 8. P. 760.</mixed-citation></ref><ref id="B165"><label>165.</label><mixed-citation>Lai Y.-J., Chao C.-H., Liao C.-C. et al. Epithelial-mesenchymal transition induced by SARS-CoV-2 required transcriptional upregulation of Snail // Am. J. Cancer Res. 2021. V. 11 (5). P. 2278–2290.</mixed-citation></ref><ref id="B166"><label>166.</label><mixed-citation>Lanser L., Burkert F.R., Bellmann-Weiler R. et al. Dynamics in anemia development and dysregulation of iron homeostasis in hospitalized patients with COVID-19 // Metabolites. 2021. V. 11 (10). P. 653.</mixed-citation></ref><ref id="B167"><label>167.</label><mixed-citation>Lechowicz K., Droźdźal S., Machaj F. et al. COVID-19: the potential treatment of pulmonary fibrosis associated with SARS-CoV-2 infection // J. Clin. Med. 2020. V. 9 (6). P. 1917.</mixed-citation></ref><ref id="B168"><label>168.</label><mixed-citation>Ledford H. Coronavirus breakthrough: dexamethasone is first drug shown to save lives // Nature. 2020. V. 582 (7813). P. 469.</mixed-citation></ref><ref id="B169"><label>169.</label><mixed-citation>Lee C.H. Reversal of epithelial-mesenchymal transition by natural anti-inflammatory and pro-resolving lipids // Cancers. 2019. V. 11 (12). P. 1841.</mixed-citation></ref><ref id="B170"><label>170.</label><mixed-citation>Lee K., Nelson C.M. New insights into the regulation of epithelial-mesenchymal transition and tissue fibrosis // Int. Rev. Cell Mol. Biol. 2012. V. 294. P. 171–221.</mixed-citation></ref><ref id="B171"><label>171.</label><mixed-citation>Lee Y.Y., Park H.H., Park W. et al. Long-acting nanoparticulate DNase-1 for effective suppression of SARS-CoV-2- mediated neutrophil activities and cytokine storm // Biomaterials. 2021. V. 267. P. 120389.</mixed-citation></ref><ref id="B172"><label>172.</label><mixed-citation>Leisman D.E., Mehta A., Thompson B.T. et al. Alveolar, endothelial, and organ injury marker dynamics in severe COVID-19 // Am. J. Respir. Crit. Care Med. 2022. V. 205 (5). P. 507–519.</mixed-citation></ref><ref id="B173"><label>173.</label><mixed-citation>Li C., Wang R., Wu A. et al. SARS-CoV-2 as potential microRNA sponge in COVID-19 patients // BMC Med. Genomics. 2022. V. 15 (Suppl. 2). P. 94.</mixed-citation></ref><ref id="B174"><label>174.</label><mixed-citation>Li H., Xu L., Zhao L. et al. Insulin-like growth factor-I induces epithelial to mesenchymal transition via GSK-3β and ZEB2 in the BGC-823 gastric cancer cell line // Oncol. Lett. 2015. V. 9 (1). P. 143–148.</mixed-citation></ref><ref id="B175"><label>175.</label><mixed-citation>Li L., Zhuang Y., Zhao X., Li X. Long non-coding RNA in neuronal development and neurological disorders // Front. Genet. 2019. V. 9. P. 744.</mixed-citation></ref><ref id="B176"><label>176.</label><mixed-citation>Li L.F., Kao K.C., Liu Y.Y. et al. Nintedanib reduces ventilation-augmented bleomycin-induced epithelial-mesenchymal transition and lung fibrosis through suppression of the Src pathway // J. Cell Mol. Med. 2017. V. 21 (11). P. 2937–2949.</mixed-citation></ref><ref id="B177"><label>177.</label><mixed-citation>Liao M., Liu Y., Yuan J. et al. Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19 // Nat. Med. 2020. V. 26 (6). P. 842–844.</mixed-citation></ref><ref id="B178"><label>178.</label><mixed-citation>Liberale L., Holy E.W., Akhmedov A. et al. Interleukin-1β mediates arterial thrombus formation via NET-associated tissue factor // J. Clin. Med. 2019. V. 8 (12). P. 2072.</mixed-citation></ref><ref id="B179"><label>179.</label><mixed-citation>Lillie F.R. The development of the chick – an introduction to embryology. New York: Henry Holt and Co. 1908. 472 p.</mixed-citation></ref><ref id="B180"><label>180.</label><mixed-citation>Lim D.H., Maher E.R. DNA methylation: a form of epigenetic control of gene expression // Obstetr. Gynaecol. 2010. V. 12. P. 37–42.</mixed-citation></ref><ref id="B181"><label>181.</label><mixed-citation>Lim S., Zhang M., Chang T.L. ACE2-independent alternative receptors for SARS-CoV-2 // Viruses. 2022. V. 14 (11). P. 2535.</mixed-citation></ref><ref id="B182"><label>182.</label><mixed-citation>Lippi G., Mattiuzzi C. Hemoglobin value may be decreased in patients with severe coronavirus disease 2019 // Hematol. Transfus. Cell Ther. 2020. V. 42 (2). P. 116–117.</mixed-citation></ref><ref id="B183"><label>183.</label><mixed-citation>Liu Q.L., Luo M., Huang C. et al. Epigenetic regulation of epithelial to mesenchymal transition in the cancer metastatic cascade: implications for cancer therapy // Front. Oncol. 2021. V. 11. P. 657546.</mixed-citation></ref><ref id="B184"><label>184.</label><mixed-citation>Liu X., Li T., Chen et al. Role and intervention of PAD4 in NETs in acute respiratory distress syndrome // Respir. Res. 2024. V. 25 (1). P. 63.</mixed-citation></ref><ref id="B185"><label>185.</label><mixed-citation>Liu X., Xiong W., Ye M. et al. Non-coding RNAs expression in SARS-CoV-2 infection: pathogenesis, clinical significance, and therapeutic targets // Signal Transduct. Target Ther. 2023. V. 8 (1). P. 441.</mixed-citation></ref><ref id="B186"><label>186.</label><mixed-citation>Loh C.-Y., Chai J.Y., Tang T.F. et al. The E-cadherin and N-cadherin switch in epithelial-to-mesenchymal transition: signaling, therapeutic implications, and challen- ges // Cells. 2019. V. 8 (10). P. 1118.</mixed-citation></ref><ref id="B187"><label>187.</label><mixed-citation>Lopez-Leon S., Wegman-Ostrosky T., Perelman C. et al. More than 50 long-term effects of COVID-19: a systematic review and meta-analysis // Sci. Rep. 2021. V. 11. P. 16144.</mixed-citation></ref><ref id="B188"><label>188.</label><mixed-citation>López-Novoa J.M., Nieto M.A. Inflammation and EMT: an alliance towards organ fibrosis and cancer progression // EMBO Mol. Med. 2009. V. 1 (6–7). P. 303–314.</mixed-citation></ref><ref id="B189"><label>189.</label><mixed-citation>Lovisa S. Epithelial-to-mesenchymal transition in fibrosis: concepts and targeting strategies // Front. Pharmacol. 2021. V. 12. P. 737570.</mixed-citation></ref><ref id="B190"><label>190.</label><mixed-citation>Lynch J.P., White E., Flaherty K. Corticosteroids in idiopathic pulmonary fibrosis // Curr. Opin. Pulm. Med. 2001. V. 7 (5). P. 298–308.</mixed-citation></ref><ref id="B191"><label>191.</label><mixed-citation>Maghsadi Z, Azadmehr A., Moghadamnia A.A. et al. N-acetylcysteine attenuated pulmonary fibrosis induced bleomycin via immunomodulation responses // Res. Pharm. Sci. 2023. V. 18 (2). P. 177–184.</mixed-citation></ref><ref id="B192"><label>192.</label><mixed-citation>Mahler D.A., Murray J.A., Waterman L.A. et al. Endogenous opioids modify dyspnoea during treadmill exercise in patients with COPD // Eur. Respir. J. 2009. V. 33 (4). P. 771–777.</mixed-citation></ref><ref id="B193"><label>193.</label><mixed-citation>Mantlo E., Bukreyeva N., Maruyama J. et al. Antiviral activities of type I interferons to SARS-CoV-2 infection // Antiviral Res. 2020. V. 179. P. 104811.</mixed-citation></ref><ref id="B194"><label>194.</label><mixed-citation>Marik P.E., Bellomo R. Stress hyperglycemia: an essential survival response! // Crit. Care. 2013. V. 17 (2). P. 305.</mixed-citation></ref><ref id="B195"><label>195.</label><mixed-citation>Marconi G.D., Fonticoli L., Rajan T.S. et al. Epithelial-mesenchymal transition (EMT): the type-2 EMT in wound healing, tissue regeneration and organ fibrosis // Cells. 2021. V. 10 (7). P. 1587.</mixed-citation></ref><ref id="B196"><label>196.</label><mixed-citation>Martin-Rojas R.M., Chasco-Ganuza M., Casanova-Prieto S. et al. A mild deficiency of ADAMTS13 is associated with severity in COVID-19: comparison of the coagulation profile in critically and noncritically ill patients // Blood Coagul. Fibrinolysis. 2021. V. 32 (7). P. 458–467.</mixed-citation></ref><ref id="B197"><label>197.</label><mixed-citation>Mayi B.S., Leibowitz J.A., Woods A.T. et al. The role of neuropilin-1 in COVID-19 // PLoS Pathog. 2021. V. 17 (1). P. e1009153.</mixed-citation></ref><ref id="B198"><label>198.</label><mixed-citation>McComsey G.A., Yau L. Asymptomatic hyperlactataemia: predictive value, natural history and correlates // Antivir. Ther. 2004. V. 9 (2). P. 205–212.</mixed-citation></ref><ref id="B199"><label>199.</label><mixed-citation>McDonald O.G., Wu H., Timp W. et al. Genome-scale epigenetic reprogramming during epithelial-to-mesenchymal transition // Nat. Struct. Mol. Biol. 2011. V. 18 (8). P. 867–874.</mixed-citation></ref><ref id="B200"><label>200.</label><mixed-citation>McNally J.S., Saxena A., Cai H. et al. Regulation of xanthine oxidoreductase protein expression by hydrogen peroxide and calcium // Arterioscler. Thromb. Vasc. Biol. 2005. V. 25 (8). P. 1623–1628.</mixed-citation></ref><ref id="B201"><label>201.</label><mixed-citation>Mehta P., McAuley D.F., Brown M. et al. COVID-19: consider cytokine storm syndromes and immunosuppression // Lancet. 2020. V. 395 (10229). P. 1033–1034.</mixed-citation></ref><ref id="B202"><label>202.</label><mixed-citation>Menshawey R., Menshawey E., Alserr A.H.K., Abdelmassih A.F. Low iron mitigates viral survival: insights from evolution, genetics, and pandemics – a review of current hypothesis // Egypt. J. Med. Hum. Genet. 2020. V. 21 (1). P. 75.</mixed-citation></ref><ref id="B203"><label>203.</label><mixed-citation>Meyer-Schaller N., Heck C., Tiede S. et al. Foxf2 plays role during transforming growth factor beta-induced epithelial to mesenchymal transition by promoting apoptosis yet enabling cell junction dissolution and migration // Breast Cancer Res. 2018. V. 20 (1). P. 118.</mixed-citation></ref><ref id="B204"><label>204.</label><mixed-citation>Milewska A., Zarebski M., Nowak P. et al. Human coronavirus NL63 utilizes heparan sulfate proteoglycans for attachment to target cells // J. Virol. 2014. V. 88 (22). P. 13221–13230.</mixed-citation></ref><ref id="B205"><label>205.</label><mixed-citation>Milewska A., Nowak P., Owczarek K. et al. Entry of human coronavirus NL63 into the cell // J. Virol. 2018. V. 92 (3). P. e01933-17.</mixed-citation></ref><ref id="B206"><label>206.</label><mixed-citation>Miripour Z.S., Sarrami-Forooshani R., Sanati H. et al. Real-time diagnosis of rective oxygen species (ROS) in fresh sputum by electrochemical tracing; correlation between COVID-19 and viral-induced ROS in lung/respiratory epithelium during this pandemic // Biosens. Bioelectron. 2020. V. 165. P. 112435.</mixed-citation></ref><ref id="B207"><label>207.</label><mixed-citation>Mo X., Jian W., Su Z. et al. Abnormal pulmonary function in COVID-19 patients at time of hospital discharge // Eur. Respir. J. 2020. V. 55 (6). P. 2001217.</mixed-citation></ref><ref id="B208"><label>208.</label><mixed-citation>Montazersahed S., Hosseiniyan Khatabi S.M., Hejazi M.S. et al. COVID-19 infection: an overview on cytokine storm and related interventions // Virol. J. 2022. V. 19 (1). P. 92.</mixed-citation></ref><ref id="B209"><label>209.</label><mixed-citation>Morin-Surun M.P., Boudinot E., Fournie-Zaluski M.C. et al. Control of breathing by endogenous opioid peptides: possible involvement in sudden death syndrome // Neurochem. Int. 1992. V. 20 (1). P. 103–107.</mixed-citation></ref><ref id="B210"><label>210.</label><mixed-citation>Moustaqil M., Ollivier E., Chiu H.P. et al. SARS-CoV-2 proteases PLpro and 3CLpro cleave IRF3 and critical modulators of inflammatory pathways (NLRP12 and TAB1): implications for disease presentation across species // Emerg. Microb. Infect. 2021. V. 10 (1). P. 178–195.</mixed-citation></ref><ref id="B211"><label>211.</label><mixed-citation>Moutal A., Martin L., Boinon L. et al. SARS-CoV-2 spike protein co-opts VEGF-A/Neuropilin-1 receptor signsling to induce analgesia // Pain. 2021. V. 162 (1). P. 243–252.</mixed-citation></ref><ref id="B212"><label>212.</label><mixed-citation>Moyret-Lalle C., Ruiz E., Puisieux A. Epithelial-mesenchymal transition transcription factors and miRNAs: “Plastic surgeon” of breast cancer // World J. Clin. Oncol. 2014. V. 5 (5). P. 311–322.</mixed-citation></ref><ref id="B213"><label>213.</label><mixed-citation>Muhl L., Folestad E.B., Gladh H. et al. Neuropilin 1 binds PDGF-D and is a co-receptor in PDGF-D-PDGFRβ signaling // J. Cell Sci. 2017. V. 130 (8). P. 1365–1378.</mixed-citation></ref><ref id="B214"><label>214.</label><mixed-citation>Mukhopadhyay S., Sinha S., Mohapatra S.K. Analysis of transcriptomic data sets supports the role of IL-6 in NETosis and immunothrombosis in severe COVID-19 // BMC Genom. Data. 2021. V. 22 (1). P. 49.</mixed-citation></ref><ref id="B215"><label>215.</label><mixed-citation>Naidu S.A.G., Clemens R.A., Naidu A.S. SARS-CoV-2 infection dysregulates host iron Ife)-redox homeostasis (Fe-R-H): role of Fe-redox regulators, ferroptosis, inhibitors, anticoagulants, and iron-chelators in COVID-19 control // J. Diet. Suppl. 2023. V. 20 (2). P. 312–371.</mixed-citation></ref><ref id="B216"><label>216.</label><mixed-citation>Nakao N., Kurokawa T., Nonami T. et al. Hydrogen peroxide induces the production of tumor necrosis factor-alpha in RAW 264.7 macrophage cells via activation of p38 and stress-activated protein kinase // Innate Immun. 2008. V. 14 (3). P. 190–196.</mixed-citation></ref><ref id="B217"><label>217.</label><mixed-citation>Neeb Z.T., Ritter A.J., Chauhan L.V. et al. A potential role for SARS-CoV-2 small viral RNAs in targeting host microRNAs and modulating gene expression // Sci. Rep. 2022. V. 12 (1). P. 21694.</mixed-citation></ref><ref id="B218"><label>218.</label><mixed-citation>Nemeth E., Rivera S., Gabayan V. et al. IL-6 mediates hypoferremia of inflammation by inducing the synthesis of the iron regulatory hormone hepcidin // J. Clin. Invest. 2004. V. 113 (9). P. 1271–1276.</mixed-citation></ref><ref id="B219"><label>219.</label><mixed-citation>Nemeth J., Schundner A., Quast K. et al. A novel fibroblast reporter cell line for in vitro studies of pulmonary fibrosis // Front. Physiol. 2020. V. 11. P. 567675.</mixed-citation></ref><ref id="B220"><label>220.</label><mixed-citation>Neufeldt C.J., Cerikan B., Cortese M. et al. SARS-CoV-2 infection induces pro-inflammatory cytokine response through cGAS-STING and NF-κB // Commun. Biol. 2022. V. 5 (1). P. 45.</mixed-citation></ref><ref id="B221"><label>221.</label><mixed-citation>Nowotschin S., Hadjantonakis A.-K., Campbell K. The endoderm: a divergent cell lineage with many commonalities // Development. 2019. V. 146 (11). P. dev150920.</mixed-citation></ref><ref id="B222"><label>222.</label><mixed-citation>Nusrat A., Parkos C.A., Bacarra A.E. et al. Hepatocyte growth factor/scatter factor effects on epithelia. Regulation of intercellular junctions in transformed and nontransformed cell lines, basolateral polarization of c-met receptor in transformed and natural intestinal epithelia, and induction of rapid wound repair in a transformed model epithelium // J. Clin. Invest. 1994. V. 93 (5). P. 2056–2065.</mixed-citation></ref><ref id="B223"><label>223.</label><mixed-citation>Ojo A.S., Balogun S.A., Williams O.T., Ojo O. Pulmonary fibrosis in COVID-19 survivors: predictive factors and risk reduction strategies // Pulm. Med. 2020. V. 2020. P. 6175964.</mixed-citation></ref><ref id="B224"><label>224.</label><mixed-citation>Ono H., Imoto I., Kozaki K. et al. SIX1 promotes epithelial-mesenchymal transition in colorectal cancer through ZEB1 activation // Oncogene. 2012. V. 31 (47). P. 4923–4934.</mixed-citation></ref><ref id="B225"><label>225.</label><mixed-citation>Ono T., Mimuro J., Madoiwa S. et al. Severe secondary deficiency of von Willebrand factor-cleaving protease (ADAMTS13) in patients with sepsis-induced disseminated intravascular coagulation: its correlation with development of renal failure // Blood. 2006. V. 107 (2). P. 528–534.</mixed-citation></ref><ref id="B226"><label>226.</label><mixed-citation>Ottestad W., Søvik S. COVID-19 patients with respiratory failure: what can we learn from aviation medicine? // Br. J. Anaesth. 2020. V. 125 (3). P. e280–e281.</mixed-citation></ref><ref id="B227"><label>227.</label><mixed-citation>Pal R., Banerjee M. Cortisol and COVID-19 – putting undue stress on the “Stress Hormone” // US Endocrinology. 2020. V. 16 (2). P. 66–67.</mixed-citation></ref><ref id="B228"><label>228.</label><mixed-citation>Pandolfi L., Bozzini S., Frangipane V. et al. Neutrophil extracellular traps induce the epithelial-mesenchymal transition: implications in post-COVID-19 fibrosis // Front. Immunol. 2021. V. 12. Art. 663303.</mixed-citation></ref><ref id="B229"><label>229.</label><mixed-citation>Papayannopoulos V., Metzler K.D., Hakkim A., Zychlinsky A. Neutrophil elastase and myeloperoxidase regulate the formation of neutrophil extracellular traps // J. Cell. Biol. 2010. V. 191 (3). P. 677–691.</mixed-citation></ref><ref id="B230"><label>230.</label><mixed-citation>Park H.H., Park W., Lee Y.Y. et al. Bioinspired DNase-I-coated melanin-like nanospheres for modulation of infection-associated NETosis dysregulation // Adv. Sci. 2021. V. 8 (19). P. e2103748.</mixed-citation></ref><ref id="B231"><label>231.</label><mixed-citation>Pasquier J., Abu-Kaoud N., Al Thani H., Rafii A. Epithelial to mesenchymal transition in a clinical perspective // J. Oncol. 2015. V. 2015. P. 792182.</mixed-citation></ref><ref id="B232"><label>232.</label><mixed-citation>Pastushenko I., Brisebarre A., Sifrim A. et al. Identification of the tumor transition states occurring during EMT // Nature. 2018. V. 556 (7702). P. 463–468.</mixed-citation></ref><ref id="B233"><label>233.</label><mixed-citation>Pastushenko I., Blanpain C. EMT transition states during tumor progression and metastasis // Trends Cell Biol. 2019. V. 29 (3). P. 212–226.</mixed-citation></ref><ref id="B234"><label>234.</label><mixed-citation>Patel P., West-Mays J., Kolb M. et al. Platelet derived growth factor B and epithelial mesenchymal transition of peritoneal mesothelial cells // Matrix Biol. 2010. V. 29 (2). P. 97–106.</mixed-citation></ref><ref id="B235"><label>235.</label><mixed-citation>Patra T., Meyer K., Geerling L. et al. SARS-CoV-2 spike protein promotes IL-6 transsignaling by activation of angiotensin II receptor signaling in epithelial cells // PLoS Pathog. 2020. V. 16 (12). P. e1009128.</mixed-citation></ref><ref id="B236"><label>236.</label><mixed-citation>Pavlova E., Genova-Kalou P., Dyankov G. Susceptibility of SARS COV-2 nucleocapsid and spike proteins to reactive oxygen species and role in inflammation // Anal. Biochem. 2023. V. 670. P. 115137.</mixed-citation></ref><ref id="B237"><label>237.</label><mixed-citation>Peng J., Xiao X., Li S. et al. Aspirin alleviates pulmonary fibrosis through PI3K/AKT/mTOP-mediated autophagy pathway // Exp. Gerontol. 2023. V. 172. P. 112085.</mixed-citation></ref><ref id="B238"><label>238.</label><mixed-citation>Perdomo J., Leung H.H.L. Immune thrombosis: exploring the significance of immune complexes and NETosis // Biology. 2023. V. 12 (10). P. 1332.</mixed-citation></ref><ref id="B239"><label>239.</label><mixed-citation>Peyssonnaux C., Zinkernagel A.S., Datta V. et al. TLR4-dependent hepcidin expression by myeloid cells in response to bacterial pathogens // Blood. 2006. V. 107 (9). P. 3727–3732.</mixed-citation></ref><ref id="B240"><label>240.</label><mixed-citation>Pi P., Zeng Z., Zeng L. et al. Molecular mechanisms of COVID-19-induced pulmonary fibrosis and epithelial-mesenchymal transition // Front. Pharmacol. 2023. V. 14. P. 1218059.</mixed-citation></ref><ref id="B241"><label>241.</label><mixed-citation>Pimentel-Muiños F.X., Boada-Romero E. Selective autophagy against membranous compartments: canonical and unconventional purposes and mechanisms // Autophagy. 2014. V. 10 (3). P. 397–407.</mixed-citation></ref><ref id="B242"><label>242.</label><mixed-citation>Plowman T., Lagos D. Non-coding RNAs in COVID-19: emerging insights and current questions // Noncoding RNA. 2021. V. 7 (3). P. 54.</mixed-citation></ref><ref id="B243"><label>243.</label><mixed-citation>Prasad V., Greber U.F. The endoplasmic reticulum unfolded protein response – homeostasis, cell death and evolution in virus infections // FEMS Microbiol. Rev. 2021. V. 45 (5). P. fuab016.</mixed-citation></ref><ref id="B244"><label>244.</label><mixed-citation>Qin S., Jin P., Zhou Z. et al. The role of transposable elements in the origin and evolution of microRNAs in human // PLoS One. 2015. V. 10 (6). P. e0131365.</mixed-citation></ref><ref id="B245"><label>245.</label><mixed-citation>Qu Y., Wang X., Zhu Y. et al. ORF3a-mediated incomplete autophagy facilitates severe acute respiratory syndrome coronavirus-2 replication // Front. Cell Dev. Biol. 2021. V. 9. P. 716208.</mixed-citation></ref><ref id="B246"><label>246.</label><mixed-citation>Qvisth V., Hagström-Toft E., Enoksson S., Bolinder J. Catecholamine regulation of local lactate production in vivo in skeletal muscle and adipose tissue: role of β-adrenoreceptor subtypes // J. Clin. Endocrinol. Metab. 2008. V. 93 (1). P. 240–246.</mixed-citation></ref><ref id="B247"><label>247.</label><mixed-citation>Rabouw H.H., Langereis M.A., Knaap R.C.M. et al. Middle East respiratory coronavirus accessory protein 4a inhibits PKR-mediated antiviral stress responses // PLoS Pathog. 2016. V. 12 (10). P. e1005982.</mixed-citation></ref><ref id="B248"><label>248.</label><mixed-citation>Raghu G., Collard H.R., Egan J.J. et al. An official ATS/ERS/JRS/ALAT statement: idiopathic pulmonary fibrosis: evidence-based guidelines for diagnosis and management // Am. J. Respir. Crit. Care Med. 2011. V. 183 (6). P. 788–824.</mixed-citation></ref><ref id="B249"><label>249.</label><mixed-citation>Rahman A., Tabassum T., Araf Y. et al. Silent hypoxia in COVID-19: pathomechanism and possible management strategy // Mol. Biol. Rep. 2021. V. 48 (4). P. 3863–3869.</mixed-citation></ref><ref id="B250"><label>250.</label><mixed-citation>Rapozzi V., Juarranz A., Habib A. et al. Is haem real target of COVID-19 // Photodiagn. Photodyn. Ther. 2021. V. 35. P. 102381.</mixed-citation></ref><ref id="B251"><label>251.</label><mixed-citation>Reza J.N., Gavazzi I., Cohen J. Neuropilin-1 is expressed on adult mammalian dorsal root ganglion neurons and mediates semaphorin3a/collapsing-1-induced growth cone collapse by small diameter sensory afferents // Mol. Cell Neurosci. 1999. V. 14 (4–5). P. 317–326.</mixed-citation></ref><ref id="B252"><label>252.</label><mixed-citation>Ribeiro A., Mendonça M., Sousa C.S. et al. Prevalence, presentation and outcomes of silent hypoxemia in COVID-19 // Clin. Med. Insights Circ. Respir. Pulm. Med. 2022. V. 16. P. 11795484221082761.</mixed-citation></ref><ref id="B253"><label>253.</label><mixed-citation>Rowles D.L., Tsai Y.C., Greco T.M. et al. DNA methyltransferase DNMR3A associates with viral proteins and impact HSV-1 infection // Proteomics. 2015. V. 15 (12). P. 1968–1982.</mixed-citation></ref><ref id="B254"><label>254.</label><mixed-citation>Ruivinho C., Gama-Carvalho M. Small non-coding RNAs encoded by RNA viruses: old controversies and new lessons from the COVID-19 pandemic // Front. Genet. 2023. V. 14. P. 1216890.</mixed-citation></ref><ref id="B255"><label>255.</label><mixed-citation>Saito S., Zhuang Y., Shan B. et al. Tubastatin ameliorates pulmonary fibrosis by targeting the TGFβ-PI3K-Akt pathway // PLoS One. 2017. V. 12 (10). P. e0186615.</mixed-citation></ref><ref id="B256"><label>256.</label><mixed-citation>Salaris C., Scarpa M., Elli M. et al. Protective effects of lactoferrin against SARS-CoV-2 infection in vitro // Nutrients. 2021. V. 13 (2). P. 328.</mixed-citation></ref><ref id="B257"><label>257.</label><mixed-citation>Samuel C.E. Interferon at the crossroads of SARS-CoV-2 infection and COVID-19 disease // J. Biol. Chem. 2023. V. 299 (8). P. 104960.</mixed-citation></ref><ref id="B258"><label>258.</label><mixed-citation>Sang E.R., Tian Y., Miller L.C., Sang Y. Epigenetic evolution of ACE2 and IL-6 genes: non-canonical interferon-stimulated genes correlate to COVID-19 susceptibility in vertebrates // Genes. 2021. V. 12 (2). P. 154.</mixed-citation></ref><ref id="B259"><label>259.</label><mixed-citation>Santiago J.J., Dangerfield A.L., Rattan S.G. et al. Cardiac fibroblast to myofibroblast differentiation in vivo and in vitro: expression of focal adhesion components in neonatal and adult rat ventricular myofibroblasts // Dev. Dyn. 2010. V. 239 (6). P. 1573–1584.</mixed-citation></ref><ref id="B260"><label>260.</label><mixed-citation>Santiago T.V., Edelman N.H. Opioids and breathing // J. Appl. Physiol. 1985. V. 59 (6). P. 1675–1685.</mixed-citation></ref><ref id="B261"><label>261.</label><mixed-citation>Sa Ribero M., Jouvenet N., Dreux M., Nisole S. Interplay between SARS-CoV-2 and type I interferon response // PLoS Pathog. 2020. V. 16 (7). P. e1008737.</mixed-citation></ref><ref id="B262"><label>262.</label><mixed-citation>Schönrich G., Raftery M.J., Samstag Y. Devilishly radical NETwork in COVID-19: oxidative stress, neutrophil extracellular traps (NETs), and T cell suppression // Adv. Biol. Regul. 2020. V. 77. P. 100741.</mixed-citation></ref><ref id="B263"><label>263.</label><mixed-citation>Schulert G.S., Grom A.A. Pathogenesis of macrophage activation syndrome and potential for cytokine-directed therapies // Annu. Rev. Med. 2015. V. 66. P. 145–159.</mixed-citation></ref><ref id="B264"><label>264.</label><mixed-citation>Sciacovelli M., Frezza C. Metabolic reprogramming and epithelial-to-mesenchymal transition in cancer // FEBS J. 2017. V. 284 (19). P. 3132–3144.</mixed-citation></ref><ref id="B265"><label>265.</label><mixed-citation>Seet L.F., Toh L.Z., Finger S.N. et al. Valproic acid suppresses collagen by selective regulation of Smads in conjunctival fibrosis // J. Mol. Med. 2016. V. 94 (3). P. 321–334.</mixed-citation></ref><ref id="B266"><label>266.</label><mixed-citation>Sekhon K., Bucay N., Majid S. et al. MicroRNAs and epithelial-mesenchymal transition in prostate cancer // Oncotarget. 2016. V. 7 (41). P. 67597–67611.</mixed-citation></ref><ref id="B267"><label>267.</label><mixed-citation>Setiawan F., Nurdianto A.R., Rahayu R.P. et al. Acute respiratory distress syndrome (ARDS) as the main causative death in coronavirus disease-19 (COVID-19) patients // Malaysian J. Med. Health Sci. 2023. V. 19. P. 159–165.</mixed-citation></ref><ref id="B268"><label>268.</label><mixed-citation>Severinghaus J.W. Oxyhemoglobin dissociation curve for temperature and pH variation in human lood // J. Appl. Physiol. 1958. V. 12 (3). P. 485–486.</mixed-citation></ref><ref id="B269"><label>269.</label><mixed-citation>Shaban M.S., Mayr-Buro C., Meier-Soelch J. et al. Thapsigargin: key to new host-directed coronavirus antivirals? // Trends Pharmacol. Sci. 2022. V. 43 (7). P. 557–568.</mixed-citation></ref><ref id="B270"><label>270.</label><mixed-citation>Shan T., Li L.-Y., Yang J.-M., Cheng Y. Role and clinical implication of autophagy in COVID-19 // Virol. J. 2023. V. 20 (1). P. 125.</mixed-citation></ref><ref id="B271"><label>271.</label><mixed-citation>Shen T., Wang T. Metabolic reprogramming in COVID-19 // Int. J. Mol. Sci. 2021. V. 22 (21). P. 11475.</mixed-citation></ref><ref id="B272"><label>272.</label><mixed-citation>Sheng G., Thompson E., Newgreen D., Denker H.W. Twenty years on for the Epithelial-Mesenchymal Transition International Association (TEMTIA): an interview with co-founders Erik Thompson and Donald Newgree // Cells Tissues Organs. 2022. V. 211 (2). P. 252–260.</mixed-citation></ref><ref id="B273"><label>273.</label><mixed-citation>Shepley-McTaggart A., Sagum C.A., Oliva I. et al. SARS-CoV-2 envelope (E) protein interacts with PDZ-domain-2 of host tight junctions protein ZO1 // PLoS One. 2021. V. 16 (6). P. e0251955.</mixed-citation></ref><ref id="B274"><label>274.</label><mixed-citation>Sim J.-R., Shin D.H., Park P.-G. et al. Amelioration of SARS-CoV-2 infection by ANO6 phospholipid scramblase inhibition // Cell Rep. 2022. V. 40 (3). P. 111117.</mixed-citation></ref><ref id="B275"><label>275.</label><mixed-citation>Singer B.D. A practical guide to the measurement and analysis of DNA methylation // Am. J. Respir. Cell Mol. Biol. 2019. V. 61 (4). P. 417–428.</mixed-citation></ref><ref id="B276"><label>276.</label><mixed-citation>Skendros P., Mitsios A., Chrysanthopoulou A. et al. Complement and tissue factor-enriched neutrophil extracellular traps are key drivers in COVID-19 immunothrombosis // J. Clin. Invest. 2020. V. 130 (11). P. 6151–6157.</mixed-citation></ref><ref id="B277"><label>277.</label><mixed-citation>Soker S., Takashima S., Miao H.Q. et al. Neuropilin-1 is expressed by endothelial and tumor cells as an isoform-specific receptor for vascular endothelial growth factor // Cell. 1998. V. 92 (6). P. 735–745.</mixed-citation></ref><ref id="B278"><label>278.</label><mixed-citation>Song L., Wang D., Abbas G. et al. The main protease of SARS-CoV-2 cleaves histone deacetylases and DCP1A attenuating the immune defense of the interferon-stimulated genes // J. Biol. Chem. 2023. V. 299 (3). P. 102990.</mixed-citation></ref><ref id="B279"><label>279.</label><mixed-citation>Soriano J.V., Pepper M.S., Nakamura T. et al. Hepatocyte growth factor stimulates extensive development of branching duct-like structures by cloned mammary gland epithelial cells // J. Cell Sci. 1995. V. 108 (Pt 2). P. 413–430.</mixed-citation></ref><ref id="B280"><label>280.</label><mixed-citation>Sorvillo N., Mizurini D.M., Coxon C. et al. Plasma peptidylarginine deiminase IV promotes VWF-platelet string formation and accelerates thrombosis after vessel injury // Circ. Res. 2019. V. 125 (5). P. 507–519.</mixed-citation></ref><ref id="B281"><label>281.</label><mixed-citation>South K., Lane D.A. ADAMTS-13 and von Willebrand factor: a dynamic duo // J. Thromb. Haemost. 2018. V. 16 (1). P. 6–18.</mixed-citation></ref><ref id="B282"><label>282.</label><mixed-citation>Stetson D.B., Medzhitov R. Antiviral defense: interferons and beyond // J. Exp. Med. 2006. V. 203 (8). P. 1837–1841.</mixed-citation></ref><ref id="B283"><label>283.</label><mixed-citation>Stoker M., Perryman M. An epithelial scatter factor released by embryo // J. Cell Sci. 1985. V. 77. P. 209–223.</mixed-citation></ref><ref id="B284"><label>284.</label><mixed-citation>Strich J.R., Ramos-Benitez M.J., Randazzo D. et al. Fostamatinib inhibits neutrophils extracellular traps induced by COVID-19 patient plasma: a potential therapeutic // J. Infect. Dis. 2021. V. 223 (6). P. 981–984.</mixed-citation></ref><ref id="B285"><label>285.</label><mixed-citation>Suarez-Carmona M., Lesage J., Cataldo D., Gilles C. EMT and inflammation: inseparable actors of cancer progression // Mol. Oncol. 2017. V. 11 (7). P. 805–823.</mixed-citation></ref><ref id="B286"><label>286.</label><mixed-citation>Sulpice E., Plouet J., Berge M. et al. Neuropilin-1 and neuropilin-2 act as coreceptors, potentiating proangiogenic activity // Blood. 2008. V. 111 (4). P. 2036–2045.</mixed-citation></ref><ref id="B287"><label>287.</label><mixed-citation>Sultan S., Sultan M. COVID-19 cytokine storm and novel truth // Med. Hypotheses. 2020. V. 144. P. 109875.</mixed-citation></ref><ref id="B288"><label>288.</label><mixed-citation>Sun L., Fang J. Epigenetic regulation of epithelial-mesenchymal transition // Cell Mol. Life Sci. 2016. V. 73 (23). P. 4493–4515.</mixed-citation></ref><ref id="B289"><label>289.</label><mixed-citation>Sun X., Wang T., Cai D. et al. Cytokine storm intervention in the early stages of COVID-19 pneumonia // Cyt. Growth Factor Rev. 2020. V. 53. P. 38–42.</mixed-citation></ref><ref id="B290"><label>290.</label><mixed-citation>Surabhi S., Jachmann L.H., Shumba P. et al. Hydrogen peroxide is crucial for NLRP3 inflammasome-mediated IL-β production and cell death in pneumococcal infections of bronchial epithelial cells // J. Innate Immun. 2022. V. 14 (3). P. 192–206.</mixed-citation></ref><ref id="B291"><label>291.</label><mixed-citation>Suzuki A., Maeda T., Baba Y. et al. Acidic extracellular pH promotes epithelial mesenchymal transition in Lewis lung carcinoma model // Cancer Cell Int. 2014. V. 14 (1). P. 129.</mixed-citation></ref><ref id="B292"><label>292.</label><mixed-citation>Swenson K.E., Hardin C.C. Pathophysiology of hypoxemia in COVID-19 lung disease // Clin. Chest. Med. 2023. V. 44 (2). P. 239–248.</mixed-citation></ref><ref id="B293"><label>293.</label><mixed-citation>Szczepanski A., Owczarek K., Browska M. et al. Canine respiratory coronavirus, bovine coronavirus, and human coronavirus OC43: receptors and attachment factors // Viruses. 2019. V. 11 (4). P. 328.</mixed-citation></ref><ref id="B294"><label>294.</label><mixed-citation>Taefehshokr N., Taefehshokr S., Hemmat N., Heit B. COVID-19: perspectives on innate immune evasion // Front. Immunol. 2020. V. 11. P. 580641.</mixed-citation></ref><ref id="B295"><label>295.</label><mixed-citation>Tam S.Y., Wu V.W., Law H.K.W. Hypoxia-induced epithe- lial-mesenchymal transition in cancers: HIF-1α and beyond // Front. Oncol. 2020. V. 10. P. 486.</mixed-citation></ref><ref id="B296"><label>296.</label><mixed-citation>Tan T., Khoo B., Mills E.G. et al. Association between high serum total cortisol concentrations and mortality from СOVID-19 // Lancet Diabet. Endocrinol. 2020. V. 8 (8). P. 659–660.</mixed-citation></ref><ref id="B297"><label>297.</label><mixed-citation>Tang N., Li D., Wang X., Sun Z. Abnormal coagulation parameters are associated with poor prognosis in patients with novel coronavirus pneumonia // J. Thromb. Haemost. 2020. V. 18 (4). P. 844-847.</mixed-citation></ref><ref id="B298"><label>298.</label><mixed-citation>Teijaro J.R. Cytokine storms in infectious diseases // Semin. Immunopathol. 2017. V. 39 (5). P. 501–503.</mixed-citation></ref><ref id="B299"><label>299.</label><mixed-citation>Terman G.W., Shavit Y., Lewis J.W. et al. Intrinsic mechanism of pain inhibition: activation by stress // Science. 1984. V. 226 (4680). P. 1270–1277.</mixed-citation></ref><ref id="B300"><label>300.</label><mixed-citation>Teka O.F., Mezgebu L., Getahun C. et al. TET proteins and their role in regulation of DNA methylation // Asian J. Biomed. Pharmaceut. Sci. 2022. V. 12 (89). P. 121.</mixed-citation></ref><ref id="B301"><label>301.</label><mixed-citation>Tian H., Wang L., Fu T. Ephedrine alleviates bleomycin-induced pulmonary fibrosis by inhibiting epithelial-mesenchymal transition and restraining NF-κB signaling // J. Toxicol. Sci. 2023. V. 48 (10). P. 547–556.</mixed-citation></ref><ref id="B302"><label>302.</label><mixed-citation>Thiam H.R., Wong S.L., Wagner D.D., Waterman C.M. Cellular mechanisms of NETosis // Annu. Rev. Cell Dev. Biol. 2020. V. 36. P. 191–218.</mixed-citation></ref><ref id="B303"><label>303.</label><mixed-citation>Thomas S.R., Chen K., Keaney J.F. Hydrogen peroxide activates endothelial nitric-oxide synthase through coordinated phosphorylation and dephosphorylation via phosphoinositide 3-kinase-dependent signaling pathway // J. Biol. Chem. 2002. V. 277 (8). P. 6017–6024.</mixed-citation></ref><ref id="B304"><label>304.</label><mixed-citation>Thuan D.T.B., Zayed H., Eid A.H. et al. A potential link between oxidative stress and endothelial-to-mesenchymal transition in systemic sclerosis // Front. Immunol. 2018. V. 9. P. 1985.</mixed-citation></ref><ref id="B305"><label>305.</label><mixed-citation>Torres-Ruiz J., Absalón-Aguilar A., Nuñez-Aguirre M. et al. Neutrophil extracellular traps contribute to COVID-19 hyperinflammation and humoral autoimmunity // Cell. 2021. V. 10 (10). P. 2545.</mixed-citation></ref><ref id="B306"><label>306.</label><mixed-citation>Treiman M., Caspersen C., Christensen S.B. A tool coming of age: thapsigargin as an inhibitor of sarco-endoplasmic reticulum Ca(2+)-ATPases // Trends Pharmacol. Sci. 1998. V. 19 (4). P. 131-135.</mixed-citation></ref><ref id="B307"><label>307.</label><mixed-citation>Trendowski M. Exploring the inherent metastasis of leukemia to improve chemotherapeutic approaches // Cell Dev. Biol. 2014. V. 3 (2). P. 1000137.</mixed-citation></ref><ref id="B308"><label>308.</label><mixed-citation>Tsujimoto M., Yokota S., Vilcek J., Weissmann G. Tumor necrosis factor provokes superoxide anion generation from neutrophils // Biochem. Biophys. Res. Commun. 1986. V. 137 (3). P. 1094–1100.</mixed-citation></ref><ref id="B309"><label>309.</label><mixed-citation>Vallelian F., Schaer C.A., Deuel J.W. et al. Revisiting the putative role of heme as a trigger of inflammation // Pharmacol. Res. Perspect. 2018. V. 6 (2). P. e00392.</mixed-citation></ref><ref id="B310"><label>310.</label><mixed-citation>Valles A.M., Boyer B., Badet J. et al. Acidic fibroblast growth factor is a modulator of epithelial plasticity in a rat bladder carcinoma cell line // PNAS USA. 1990. V. 87 (3). P. 1124–1128.</mixed-citation></ref><ref id="B311"><label>311.</label><mixed-citation>van Otterdijk S.D., Mathers J.C., Strathdee G. Do age-related changes in DNA methylation play a role in the development of age-related diseases? // Biochem. Soc. Trans. 2013. V. 41 (3). P. 803–807.</mixed-citation></ref><ref id="B312"><label>312.</label><mixed-citation>Veras F.P., Pontelli M.C., Silva C.M. et al. SARS-CoV-2-triggered neutrophil extracellular traps mediate COVID-19 pathology // J. Exp. Med. 2020. V. 217 (12). P. e20201129.</mixed-citation></ref><ref id="B313"><label>313.</label><mixed-citation>Vianello S., Lutoff M.P. In vitro endoderm emergence and self-organisation in the absence of extraembryonic tissues and embryonic architecture // BioRxiv. 2020. URL: https:// www.biorxiv.org/content/10.1101/2020.06.07.138883v3.full.pdf (дата обращения: 09.11.2024)</mixed-citation></ref><ref id="B314"><label>314.</label><mixed-citation>Vitale-Cross L., Szalayova I., Scoggins A. et al. SARS-CoV-2 entry sites are present in all structural elements of the human glossopharyngeal and vagal nerves: сlinical implications // eBioMedicine. 2022. V. 78. P. 103981.</mixed-citation></ref><ref id="B315"><label>315.</label><mixed-citation>Wang D., Li S., Chen Y. et al. Sodium thiosulfate inhibits epithelial-mesenchymal transition in melanoma via regulating the Wnt/β-catenin signaling pathway // J. Dermatol. Sci. 2023. V. 109 (2). P. 89-98.</mixed-citation></ref><ref id="B316"><label>316.</label><mixed-citation>Wang X., Chen S., Shen T. et al. Trichostatin A reverses epithelial-mesenchymal transition and attenuates invasion and migration in MCF-7 breast cancer cells // Exp. Ther. Med. 2020. V. 19 (3). P. 1687–1694.</mixed-citation></ref><ref id="B317"><label>317.</label><mixed-citation>Wang Y., Chen J., Ling M. et al. Hypochlorous acid generated by neutrophils inactivates ADAMTS13: an oxidative mechanism for regulating ADAMTS13 proteolytic activity during inflammation // J. Biol. Chem. 2015. V. 290 (3). P. 1422–1431.</mixed-citation></ref><ref id="B318"><label>318.</label><mixed-citation>Wang Y., Luo L., Braun O.Ö. et al. Neutrophil extracellular trap-microparticle complexes enhance thrombin generation via the intrinsic pathway of coagulation in mice // Sci. Rep. 2018. V. 8 (1). P. 4020.</mixed-citation></ref><ref id="B319"><label>319.</label><mixed-citation>Wang Z., Li Y., Kong D., Sarkar F.H. The role of Notch signaling pathway in epithelial-mesenchymal transition (EMT) during development and tumor aggressiveness // Curr. Drug Targets. 2010. V. 11 (6). P. 745–751.</mixed-citation></ref><ref id="B320"><label>320.</label><mixed-citation>Wei C., Wan L., Yan Q. et al. HDL-scavenger receptor B type 1 facilitates SARS-CoV-2 entry // Nat. Metab. 2020. V. (12). P. 1391–1400.</mixed-citation></ref><ref id="B321"><label>321.</label><mixed-citation>Wei J.W., Huang K., Yang C., Kang C.S. Non-coding RNAs as regulators in epigenetics // Oncol. Rep. 2017. V. 37 (1). P. 3–9.</mixed-citation></ref><ref id="B322"><label>322.</label><mixed-citation>Wei Z., Gao Y., Meng F. et al. iDMer: an integrative and mechanism-driven response system for identifying compound interventions for sudden virus outbreak // Brief. Bioinform. 2021. V. 22 (2). P. 976–987.</mixed-citation></ref><ref id="B323"><label>323.</label><mixed-citation>Wenzhong L., Hualan L. COVID-19: captures iron and generates reactive oxygen species to damage the human immune system // Autoimmunity. 2021. V. 54 (4). P. 213–224.</mixed-citation></ref><ref id="B324"><label>324.</label><mixed-citation>WHO. Clinical management of severe acute respiratory infection when novel coronavirus (nCoV) infection is suspected 12 January 2020 / WHO. URL: https://iris.who.int/ bitstream/handle/10665/332299/WHO-2019-nCoV-Clinical-2020.1-eng.pdf (дата обращения: 09.11.2024)</mixed-citation></ref><ref id="B325"><label>325.</label><mixed-citation>Williams A.E., Chambers R.C. The mercurial nature of neutrophils: still an enigma in ARDS? // Am. J. Physiol. Lung Cell Mol. Physiol. 2014. V. 306 (3). P. L217–L230.</mixed-citation></ref><ref id="B326"><label>326.</label><mixed-citation>Willis R.A., Nussler A.K., Fries K.M. et al. Induction of nitric oxide synthase in subset of murine pulmonary fibroblasts: effect on fibroblast interleukin-6 production // Clin. Immunol. Immunopathol. 1994. V. 71 (2). P. 231–239.</mixed-citation></ref><ref id="B327"><label>327.</label><mixed-citation>Wollin L., Distler J.H.W., Redente E.F. et al. Potential nintedanib in treatment of progressive fibrosing lung diseases // Eur. Respir. J. 2019. V. 54 (3). P. 1900161.</mixed-citation></ref><ref id="B328"><label>328.</label><mixed-citation>Wrapp D., Wang N., Corbett K.S. et al. Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation // Science. 2020. V. 367 (6483). P. 1260–1263.</mixed-citation></ref><ref id="B329"><label>329.</label><mixed-citation>Wu J., Shi Y., Pan X. et al. ORF9b inhibits RIG-I-MAVS antiviral signaling by interrupting K63-limked ubiquitination of NEMO // Cell Rep. 2021. V. 34 (7). P. 108761.</mixed-citation></ref><ref id="B330"><label>330.</label><mixed-citation>Wu Q., Hou X., Xia J. et al. Emerging roles of PDGF-D in EMT progression during tumorigenesis // Cancer Treat. Rev. 2013. V. 39 (6). P. 640–646.</mixed-citation></ref><ref id="B331"><label>331.</label><mixed-citation>Xia H., Cao Z., Xie X. et al. Evasion of type I interferon by SARS-CoV-2 // Cell Rep. 2020, V. 33 (1). P. 108234.</mixed-citation></ref><ref id="B332"><label>332.</label><mixed-citation>Xiao Y., Vermund S.H. DNA methylation in long COVID // Front. Virol. 2024. V. 4. P. 1371683.</mixed-citation></ref><ref id="B333"><label>333.</label><mixed-citation>Xu J., Lamouille S., Derynck R. TGF-beta-induced epithelial to mesenchymal transition // Cell Res. 2009. V. 19 (2). P. 156–172.</mixed-citation></ref><ref id="B334"><label>334.</label><mixed-citation>Xu L., Fukumura D., Jain R.K. Acidic extracellular pH induces vascular endothelial growth factor (VEGF) in human glioblastoma cells via ERK1/2 MAPK signaling pathway: mechanism of low pH-induced VEGF // J. Biol. Chem. 2002. V. 277 (13). P. 11368–11374.</mixed-citation></ref><ref id="B335"><label>335.</label><mixed-citation>Xu Q., Zhang Q., Ishida Y. et al. EGF induces epithelial-mesenchymal transition and cancer stem-like cell properties in human oral cancer cells via promoting Warburg effect // Oncotarget. 2017. V. 8 (6). P. 9557–9571.</mixed-citation></ref><ref id="B336"><label>336.</label><mixed-citation>Xu Z., Shi L., Wang Y. et al. Pathological findings of COVID-19 associated with acute respiratory distress syndrome // Lancet Respir. Med. 2020. V. 8 (4). P. 420–422.</mixed-citation></ref><ref id="B337"><label>337.</label><mixed-citation>Xue M., Feng L. The role of unfolded protein response in coronavirus infection and its implications for drug design // Front. Microbiol. 2021. V. 12. P. 808593.</mixed-citation></ref><ref id="B338"><label>338.</label><mixed-citation>Yadav R., Momin A., Godugu C. DNase based therapeutic approaches for the treatment of NETosis related inflammatory diseases // Int. Immunopharmacol. 2023. V. 124 (Pt A). P. 110846.</mixed-citation></ref><ref id="B339"><label>339.</label><mixed-citation>Yamamoto N., Kan-O K., Tatsuta M. et al. Incense smoke-induced oxidative stress disrupts tight junctions and bronchial epithelial barrier integrity and induces airway hyperresponsiveness in mouse lungs // Sci. Rep. 2021. V. 11 (1). P. 7222.</mixed-citation></ref><ref id="B340"><label>340.</label><mixed-citation>Yamamura S., Imai-Sumida M., Tanaka Y., Dahiya R. Interaction and cross-talk between non-coding RNAs // Cell Mol. Life Sci. 2018. V. 75 (3). P. 467–484.</mixed-citation></ref><ref id="B341"><label>341.</label><mixed-citation>Yan Q., Zhang W., Wu Y. et al. KLF8 promotes tumorigenesis, invasion and metastasis of colorectal cancer cells by transcriptional activation of FHL2 // Oncotarget. 2015. V. 6 (28). P. 25402–25417.</mixed-citation></ref><ref id="B342"><label>342.</label><mixed-citation>Yang L., Xie X., Tu Z. et al. The signal pathways and treatment of cytokine storm in COVID-19 // Signal Transduct. Target Ther. 2021. V. 6 (1). P. 255.</mixed-citation></ref><ref id="B343"><label>343.</label><mixed-citation>Yang Y., Zhang L., Geng H. et al. The structural and accessory proteins M, ORF 4a, ORF 4b, and ORF 5 of Middle East respiratory syndrome coronavirus (MERS-CoV) are potent interferon antagonists // Protein Cell. 2013. V. 4 (12). P. 951–961.</mixed-citation></ref><ref id="B344"><label>344.</label><mixed-citation>Ye Q., Wang B., Mao J. The pathogenesis and treatment of the “cytokine storm” in COVID-19 // J. Infect. 2020. V. 80 (6). P. 607–613.</mixed-citation></ref><ref id="B345"><label>345.</label><mixed-citation>Yi Z.Y., Feng L.J., Xiang Z., Yao H. Vascular endothelial growth factor receptor-1 activation mediates epithelial to mesenchymal transition in hepatocellular carcinoma cells // J. Invest. Surg. 2011. V. 24 (2). P. 67–76.</mixed-citation></ref><ref id="B346"><label>346.</label><mixed-citation>Yin Y., Liu X.Z., He X., Zhou L.Q. Exogenous coronavirus interacts with endogenous retrotransposon in human cells // Front. Cell. Infect. Microbiol. 2021. V. 11. P. 609160.</mixed-citation></ref><ref id="B347"><label>347.</label><mixed-citation>Yoo J.S., Sasaki M., Cho S.X., et al. SARS-CoV-2 inhibits induction of the MHC class I pathway by targeting the STAT1-IRF1-NLRC5 axis // Nat. Commun. 2021. V. 12 (1). P. 6602.</mixed-citation></ref><ref id="B348"><label>348.</label><mixed-citation>Yoshida K., Choisunirachon N., Saito T. et al. Hepatocyte growth factor-induced up-regulation of Twist drives epithelial-mesenchymal transition in a canine mammary tumor cell line // Res. Vet. Sci. 2014. V. 97 (3). P. 521–526.</mixed-citation></ref><ref id="B349"><label>349.</label><mixed-citation>Youn J.Y., Zhang Y., Wu Y. et al. Therapeutic application of estrogen for COVID-19: attenuation of SARS-CoV-2 spike protein and IL-6 stimulated, ACE2-dependent NOX2 activation, ROS production and MCP-1 upregulation in epithelial cells // Redox Biol. 2021. V. 46. P. 102099.</mixed-citation></ref><ref id="B350"><label>350.</label><mixed-citation>Yu M., Liu Y., Xu D. et al. Prediction of the development of pulmonary fibrosis using serial thin-section CT and clinical features in patients discharged after treatment for COVID-19 pneumonia // Korean J. Radiol. 2020. V. 21 (6). P. 746–755.</mixed-citation></ref><ref id="B351"><label>351.</label><mixed-citation>Zeisberg M., Neilson E.G. Biomarkers for epithelial-mesenchymal transition // J. Clin. Invest. 2009. V. 119 (6). P. 1429–1437.</mixed-citation></ref><ref id="B352"><label>352.</label><mixed-citation>Zhang L., Lei W., Wang X. et al. Glucocorticoid induces mesenchymal-to-epithelial transition and inhibit TGF-β1-induced epithelial-to-mesenchymal transition and cell migration // FEBS Lett. 2010. V. 584 (22). P. 4646–4654.</mixed-citation></ref><ref id="B353"><label>353.</label><mixed-citation>Zhang Y., Sun H., Pei R. et al. The SARS-CoV-2 protein ORF3a inhibits fusion of autophagosomes with lysosomes // Cell Discov. 2021. V. 7 (1). P. 31.</mixed-citation></ref><ref id="B354"><label>354.</label><mixed-citation>Zhao H., Qin H.Y., Cao L.F. et al. Phenylbutyric acid inhibits epithelial-mesenchymal transition during bleomycin-induced lung fibrosis // Toxicol. Lett. 2015. V. 232 (1). P. 213–220.</mixed-citation></ref><ref id="B355"><label>355.</label><mixed-citation>Zhu H., Chen C.Z., Sakamura S. et al. Mining of high throughput screening database reveals AP-I and autophagy pathways as potential targets for COVID-19 therapeutics // Sci. Rep. 2021. V. 11 (1). P. 6725.</mixed-citation></ref><ref id="B356"><label>356.</label><mixed-citation>Zhu Y., Chen X., Liu X. NETosis and neutrophil extracellular traps in COVID-19: immunothrombosis and beyond // Front. Immunol. 2022. V. 13. P. 838011.</mixed-citation></ref><ref id="B357"><label>357.</label><mixed-citation>Ziegler C.G.K., Allon S.J., Nyquist S.K. et al. SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is detected in specific cell subsets across tissues // Cell. 2020. V. 181 (5). P. 1016–1035.</mixed-citation></ref><ref id="B358"><label>358.</label><mixed-citation>Zuo Y., Yalavarthi S., Shi H. et al. Neutrophil extracellular traps in COVID-19 // JCI Insight. 2020. V. 5 (11). P. e138999.</mixed-citation></ref></ref-list></back></article>
