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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" article-type="research-article" dtd-version="1.2" xml:lang="en"><front><journal-meta><journal-id journal-id-type="publisher-id">Current Bioinformatics</journal-id><journal-title-group><journal-title xml:lang="en">Current Bioinformatics</journal-title><trans-title-group xml:lang="ru"><trans-title>Current Bioinformatics</trans-title></trans-title-group></journal-title-group><issn publication-format="print">1574-8936</issn><issn publication-format="electronic">2212-392X</issn><publisher><publisher-name xml:lang="en">Bentham Science</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="publisher-id">643818</article-id><article-id pub-id-type="doi">10.2174/1574893618666230529145130</article-id><article-categories><subj-group subj-group-type="toc-heading"><subject>Life Sciences</subject></subj-group><subj-group subj-group-type="article-type"><subject>Research Article</subject></subj-group></article-categories><title-group><article-title xml:lang="en">A Unified Probabilistic Framework for Modeling and Inferring Spatial Transcriptomic Data</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Huang</surname><given-names>Zhiwei</given-names></name><email>info@benthamscience.net</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name><surname>Luo</surname><given-names>Songhao</given-names></name><email>info@benthamscience.net</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name><surname>Zhang</surname><given-names>Zhenquan</given-names></name><email>info@benthamscience.net</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name><surname>Wang</surname><given-names>Zihao</given-names></name><email>info@benthamscience.net</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name><surname>Zhou</surname><given-names>Tianshou</given-names></name><email>info@benthamscience.net</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name><surname>Zhang</surname><given-names>Jiajun</given-names></name><email>info@benthamscience.net</email><xref ref-type="aff" rid="aff1"/></contrib></contrib-group><aff id="aff1"><institution>Guangdong Province Key Laboratory of Computational Science, Sun Yat-sen University</institution></aff><pub-date date-type="pub" iso-8601-date="2024-03-01" publication-format="electronic"><day>01</day><month>03</month><year>2024</year></pub-date><volume>19</volume><issue>3</issue><issue-title xml:lang="ru"/><fpage>222</fpage><lpage>234</lpage><history><date date-type="received" iso-8601-date="2025-01-07"><day>07</day><month>01</month><year>2025</year></date></history><permissions><copyright-statement xml:lang="en">Copyright ©; 2024, Bentham Science Publishers</copyright-statement><copyright-year>2024</copyright-year><copyright-holder xml:lang="en">Bentham Science Publishers</copyright-holder><ali:free_to_read xmlns:ali="http://www.niso.org/schemas/ali/1.0/"/></permissions><self-uri xlink:href="https://journals.eco-vector.com/1574-8936/article/view/643818">https://journals.eco-vector.com/1574-8936/article/view/643818</self-uri><abstract xml:lang="en"><p id="idm46041443661696">Spatial transcriptomics (ST) can provide vital insights into tissue function with the spatial organization of cell types. However, most technologies have limited spatial resolution, i.e., each measured location contains a mixture of cells, which only quantify the average expression level across many cells in the location. Recently developed algorithms show the promise to overcome these challenges by integrating single-cell and spatial data. In this review, we summarize spatial transcriptomic technologies and efforts at cell-type deconvolution. Importantly, we propose a unified probabilistic framework, integrating the details of the ST data generation process and the gene expression process simultaneously for modeling and inferring spatial transcriptomic data.</p></abstract><kwd-group xml:lang="en"><kwd>Spatial transcriptomics</kwd><kwd>single-cell transcriptomics</kwd><kwd>probabilistic modeling</kwd><kwd>cell-type deconvolution</kwd><kwd>hierarchical model</kwd><kwd>statistical inference.</kwd></kwd-group></article-meta></front><body></body><back><ref-list><ref id="B1"><label>1.</label><mixed-citation>Li J, Byrne KT, Yan F, et al. Tumor cell-intrinsic factors underlie heterogeneity of immune cell infiltration and response to immunotherapy. Immunity 2018; 49(1): 178-193.e7. doi: 10.1016/j.immuni.2018.06.006 PMID: 29958801</mixed-citation></ref><ref id="B2"><label>2.</label><mixed-citation>Brücher BLDM, Jamall IS. Cell-cell communication in the tumor microenvironment, carcinogenesis, and anticancer treatment. 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