Metabolic pathways and systemic significance of iron-regulating molecules in microorganisms

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Abstract

The review aims at analyzing the present-day knowledge of iron-regulating molecules in microorganisms: their synthesis, secretion, the transport systems that facilitate iron uptake into the cell, the role of these molecules in the development of pathological processes in the human body, and the prospects for their use in developing a new generation of antimicrobial agents.

Material and Methods. The authors analyzed full-text articles published in PubMed/Medline from 2021 to 2026. The analysis included full-length articles only. A search for the term “iron-regulating molecules of microorganisms” yielded 78 articles for the specified period. 43 articles that did not correspond to the target topic were excluded from the total list. In total, the analysis included 34 publications found through electronic searching and 16 manually-retrieved articles.

Results. Iron is a mineral essential for the normal functioning of almost all forms of life, and pathogenic microorganisms are no exception. Acting as a cofactor, iron ions are involved in various biochemical processes: the synthesis of nucleic acids and proteins, the regulation of virulence factor expression, the metabolism of reactive oxygen species; therefore, its bioavailability is crucial for the metabolism of bacteria and fungi. In the human body, the level of free iron ions is extremely low, since most of it is either in a stored state or bound to metabolic and transport molecules. Thus, despite the abundance of iron in the human body, the amount available to potential pathogens is negligible. To address this deficiency, many microorganisms have developed systems that allow them to thrive under the deficiency of this chemical element in the host organism. Conclusion. The main functions of iron-regulating molecules consist in converting iron bound to proteins or water-soluble compounds into an ionic form accessible to microorganisms. The loss of the ability to synthesize these molecules correlates with a loss of virulence in microorganisms.

About the authors

Oksana V. Boiko

Federal State Budgetary Educational Institution of Higher Education “Astrakhan State Medical University” of the Ministry of Health of Russia

Author for correspondence.
Email: oboyko08@mail.ru
ORCID iD: 0000-0003-3882-9300

Full Professor, Department of Biological Chemistry and Clinical Laboratory Diagnostics; Doctor of Medical Sciences

Russian Federation, Bakinskaya St., 121, Astrakhan, 414000

Aleksandr A. Terentiev

Federal State Autonomous Educational Institution of Higher Education “Pirogov Russian National Research Medical University” of the Ministry of Health of Russia

Email: aaterent@inbox.ru
ORCID iD: 0000-0001-8553-0614

Professor, Department of Biochemistry and Molecular Biology, Institute of Physical and Medical Chemistry; Doctor of Medical Sciences, Corresponding Member of the Russian Academy of Sciences, Professor

Russian Federation, Ostrovityanova St., 1, Moscow, 117997

Aleksandr A. Nikolaev

Federal State Budgetary Educational Institution of Higher Education “Astrakhan State Medical University” of the Ministry of Health of Russia

Email: chimnik@mail.ru
ORCID iD: 0000-0001-6607-430X

Head of the Department of Fundamental Chemistry; Doctor of Medical Sciences, Professor

Russian Federation, Bakinskaya St., 121, Astrakhan, 414000

Dariya M. Kozak

Federal State Budgetary Educational Institution of Higher Education “Astrakhan State Medical University” of the Ministry of Health of Russia

Email: kodami10@mail.ru
ORCID iD: 0009-0008-5469-3902

Associate Professor of Biological Chemistry and Clinical Laboratory Diagnostics; Candidate of Medical Sciences

Russian Federation, Bakinskaya St., 121, Astrakhan, 414000

Yuri A. Kriventsev

Federal State Budgetary Educational Institution of Higher Education “Astrakhan State Medical University” of the Ministry of Health of Russia

Email: georgy1630@yandex.ru
ORCID iD: 0009-0009-2592-0325

Full Professor, Department of Biological Chemistry and Clinical Laboratory Diagnostics; Doctor of Medical Sciences

Russian Federation, Bakinskaya St., 121, Astrakhan, 414000

Rinata A. Bisalieva

Federal State Budgetary Educational Institution of Higher Education “Astrakhan State Medical University” of the Ministry of Health of Russia

Email: rinabis@mail.ru
ORCID iD: 0009-0003-9814-5098

Associate Professor, Department of Biological Chemistry and Clinical Laboratory Diagnostics; Candidate of Medical Sciences

Russian Federation, Bakinskaya St., 121, Astrakhan, 414000

Rushaniya I. Mukhamedzyanova

Federal State Budgetary Educational Institution of Higher Education “Astrakhan State Medical University” of the Ministry of Health of Russia

Email: mrushana132@rambler.ru
ORCID iD: 0000-0001-7445-0598

Associate Professor, Department of Biological Chemistry and Clinical Laboratory Diagnostics; Candidate of Medical Sciences

Russian Federation, Bakinskaya St., 121, Astrakhan, 414000

Aziza Kh. Akhmineeva

Federal State Budgetary Military Educational Institution of Higher Education “S.M. Kirov Military Medical Academy” of the Ministry of Defense of Russia

Email: aaziza@mail.ru
ORCID iD: 0000-0002-9768-4423

Associate Professor, Department of Health Care Organization and Public Health; Doctor of Medical Sciences

Russian Federation, Akademika Lebedeva St., 6Zh, Saint-Petersburg, 194044

Margarita P. Ivanova

Federal State Budgetary Educational Institution of Higher Education “Astrakhan State Medical University” of the Ministry of Health of Russia

Email: imp85@yandex.ru
ORCID iD: 0009-0004-5016-9725

Assistant Professor, Department of Biological Chemistry and Clinical Laboratory Diagnostics

Russian Federation, Bakinskaya St., 121, Astrakhan, 414000

Margarita Yu. Medina

Federal State Budgetary Healthcare Institution “Southern District Medical Center” of the Federal Medical Biological Agency of Russia

Email: aleeraionel@mail.ru
ORCID iD: 0009-0007-4933-6153

Doctor, Department of Clinical Laboratory Diagnostics, Astrakhan Clinical Hospital

Russian Federation, Anatoliya Sergeeva St., 13, Astrakhan, 414000

Maksim Yu. Kriventsev

Federal State Budgetary Educational Institution of Higher Education “Astrakhan State Medical University” of the Ministry of Health of Russia

Email: makskr2000@gmail.com
ORCID iD: 0009-0002-8207-1701

5th year student

Russian Federation, Bakinskaya St., 121, Astrakhan, 414000

References

  1. Bullen J.J., Spalding P.B., Ward C.G., Rogers H.J. The role of Eh, pH and iron in the bactericidal power of human plasma. FEMS Microbiol Lett. 1992; 73 (1–2): 47–52. doi: 10.1016/0378-1097(92)90581-8
  2. Wang D., Zhou J., Sun X., Niu X. The Essence of Nature Can be the Simplest (3) Holistic Energy: Extracellular Fenton Reactions of All Cells. Chem Biodivers. 2025. 22 (7): e202500942. doi: 10.1002/cbdv.202500942
  3. Moldogazieva N.T., Terentiev A.A., Mokhosoev I.M., Astakhov D.V. Redox chemistry of early Earth and the origin of life. Commun Chem. 2026; 9: 143. doi: 10.1038/s42004-026-01969-w
  4. Liu L., Wang W., Wu S., Gao H. Recent Advances in the Siderophore Biology of Shewanella. Front. Microbiol. 2022; 13: 823758. doi: 10.3389/fmicb.2022.823758
  5. Torres Salazar B.O., Heilbronner S., Peschel, A., Krismer, B. Secondary Metabolites Governing Microbiome Interaction of Staphylococcal Pathogens and Commensals. Microb. Physiol. 2021; 31: 198–216. doi: 10.1159/000517082
  6. Thomsen E., Wu G., Butler A. Coordination Chemistry of an Emerging Group of Diazeniumdiolate Siderophores: Crystal Structures of M(III)-Gramibactin (M= Fe and Ga). J. Am Chem Soc. 2025; 147 (39): 36007–15. doi: 10.1021/jacs.5c13791
  7. Endo S., Ozawa T., Inomata T., Masuda H. Microorganism Immobilization Device Using Artificial Siderophores. Yakugaku Zasshi. 2024; 144 (6): 643–50. doi: 10.1248/yakushi.23-00197-3
  8. Makris C., Carmichael J.R., Zhou H., Butler A. C-Diazeniumdiolate Graminine in the Siderophore Gramibactin Is Photoreactive and Originates from Arginine. ACS Chem Biol. 2022; 18, 17 (11): 3140–7. doi: 10.1021/acschembio.2c00593
  9. Challis G.L. A widely distributed bacterial pathway for siderophore biosynthesis independent of nonribosomal peptide synthetases. Chem. Bio. Chem. 2005; 6: 601–61. doi: 10.1002/cbic.200400283
  10. Carroll C.S., Moore M.M. Ironing out siderophore biosynthesis: A review of non-ribosomal peptide synthetase (NRPS)-independent siderophore synthetases. Crit. Rev. Biochem. Mol. Biol. 2018; 53: 356–81. doi: 10.1080/10409238.2018.1476449
  11. Lee J.Y., Janes B.K., Passalacqua K.D., Pfleger B.F., Bergman N.H., Liu, H., Håkansson, K., Somu R.V., Aldrich C.C., Cendrowski S. Biosynthetic analysis of the petrobactin siderophore pathway from Bacillus anthracis. J. Bacteriol. 2007; 189: 1698–710. doi: 10.1128/JB.01526-06
  12. Butler A., Jelowicki A.M., Ogasawara H.A., Reitz Z.L., Stow P.R., Thomsen E. Mining elements of siderophore chirality encoded in microbial genomes. FEBS Lett. 2023; 597 (1): 134–40. doi: 10.1002/1873-3468.14539.
  13. Friedman D.B., Stauff, D.L., Pishchany, G., Whitwell, C.W., Torres, V.J., Skaar E.P. Staphylococcus aureus Redirects Central Metabolism to Increase Iron Availability. PLoS Pathog. 2026; 2 (8): e87. doi: 10.1371/journal.ppat.0020087
  14. Speziali C.D., Dale S.E., Henderson J.A., Vinés E.D., Heinrichs D.E. Requirement of Staphylococcus aureus ATP-binding cassette-ATPase FhuC for iron-restricted growth and evidence that it functions with more than one iron transporter. J. Bacteriol. 2016; 188 (6): 2048–55. doi: 10.1128/JB.188.6.2048-2055.2006
  15. Kramer J., Özkaya O., Kümmerli R. Bacterial siderophores in community and host interactions. Nat. Rev. Microbiol. 2022; 18: 152–63. doi: 10.1038/s41579-019-0284-4
  16. van Dijk M.C., de Kruijff R.M., Hagedoorn P.L. The Role of Iron in Staphylococcus aureus Infection and Human Disease: A Metal Tug of War at the Host-Microbe Interface. Front Cell Dev Biol. 2022; 10: 857237. doi: 10.3389/fcell.2022.857237
  17. Ghssein G., Ezzeddine Z. The Key Element Role of Metallophores in the Pathogenicity and Virulence of Staphylococcus aureus: A Review. Biology (Basel). 2022; 11 (10): 1525. doi: 10.3390/biology11101525
  18. Rajapitamahuni S., Lyou E.S., Kang B.R., Lee T.K. Microbial interaction-induced siderophore dynamics lead to phenotypic differentiation of Staphylococcus aureus Front Cell Infect Microbiol. 2023; 17: 13: 1277176. doi: 10.3389/fcimb.2023.1277176
  19. Courcol R.J., Trivier D., Bissinger M.C., Martin G.R., Brown M.R. Siderophore production by Staphylococcus aureus and identification of iron-regulated proteins. Infect Immun. 1997; 65 (5): 1944–8. doi: 10.1128/iai.65.5.1944-1948.1997
  20. Patel H., Rawat S. A genetic regulatory see-saw of biofilm and virulence in MRSA pathogenesis. Front Microbiol. 2023; 14: 1204428. doi: 10.3389/fmicb.2023.1204428
  21. Pecoraro L., Wang X., Shah D., Song X., Kumar V., Shakoor A., Tripathi K., Ramteke P.W., Rani R. Biosynthesis Pathways, Transport Mechanisms and Biotechnological Applications of Fungal Siderophores. J. Fungi (Basel). 2021; 8 (1): 21. doi: 10.3390/jof8010021
  22. Wang M., Li H. J Agric Structure, Function, and Biosynthesis of Siderophores Produced by Streptomyces Species. Food Chem. 2025; 73 (8): 4425–39. doi: 10.1021/acs.jafc.4c08231
  23. Howard D.H., Rafie R., Tiwari A., Faull K.F. Hydroxamate siderophores of Histoplasma capsulatum. Infect Immun. 2000; 68 (4): 2338–43. doi: 10.1128/IAI.68.4.2338-2343.2000.
  24. Bailey D.C., Drake E.J., Grant T.D., Gulick A.M. Structural and Functional Characterization of Aerobactin Synthetase IucA from a Hypervirulent Pathotype of Klebsiella pneumonia. Biochemistry. 2016; 28, 55 (25): 3559–70. DOI: 0.1021/acs.biochem.6b00409
  25. Perraud Q., Cantero P., Roche B., Gasser V., Normant V.P., Kuhn L., Hammann P., Mislin G.L.A., Ehret-Sabatier L., Schalk I.J. Phenotypic Adaption of Pseudomonas aeruginosa by Hacking Siderophores Produced by Other Microorganisms. Mol. Cell. Proteomics. 2020; 19 (4): 589–607. doi: 10.1074/mcp.RA119.001829
  26. Cunrath O., Graulier G., Carballido-Lopez A., Pérard J., Forster A., Geoffroy V.A., Saint Auguste P., Bumann D., Mislin G.L.A., Michaud-Soret I., Schalk I.J., Fechter P. The pathogen Pseudomonas aeruginosa optimizes the production of the siderophore pyochelin upon environmental challenges. Metallomics. 2020; 23; 12 (12): 2108–20. doi: 10.1039/d0mt00029a
  27. Schalk I.J., Perraud Q. Pseudomonas aeruginosa and its multiple strategies to access iron. Environ Microbiol. 2023; 25 (4): 811–31. doi: 10.1111/1462-2920.16328
  28. Guo D., Sheng Y., Baars O., Duckworth O.W., Chen P., Zhu Z., Zhang X., Chukwuma E., Gooden D.M., Verbrugge J., Dong H. Contrasting Effects of Catecholate and Hydroxamate Siderophores on Molybdenite Dissolution. Environ Sci Technol. 2025; 14, 59 (1): 533–44. doi: 10.1021/acs.est.4c11212
  29. Sebulsky M.T, Heinrichs D. E Identification and characterization of fhuD1 and fhuD2, two genes involved in iron-hydroxamate uptake in Staphylococcus aureus. J. Bacteriol. 2001; 183 (17): 4994–5000. doi: 10.1128/JB.183.17.4994-5000.2001
  30. Beasley Federico C., Marolda Cristina L., Cheung Johnson, Buac Suzana, Heinrichs David E Staphylococcus aureus transporters Hts, Sir, and Sst capture iron liberated from human transferrin by Staphyloferrin A, Staphyloferrin B, and catecholamine stress hormones, respectively, and contribute to virulence. Infect Immun. 2011; 79 (6): 2345–55. doi: 10.1128/IAI.00117-11
  31. Davidov Y., Tejman-Yarden N., Robinson A., Rahav G., Nissan I. Enterobactin and salmochelin S4 inhibit the growth of Staphylococcus aureus. Front Cell Infect Microbiol. 2025; 15: 1456046. doi: 10.3389/fcimb.2025.1456046
  32. Hoffmann K.M., Kingsbury J.S., March N.L., Jang Y., Nguyen J.H., Hutt M.M. Chemoenzymatic Synthesis of Select Intermediates and Natural Products of the Desferrioxamine E Siderophore Pathway. Molecules. 2022; 27 (19): 6144. doi: 10.3390/molecules27196144.
  33. Ochiai E., Kawabe T., Shionyu M., Hasegawa M. Molecular Structure and Biosynthesis of Pyoverdines Produced by Pseudomonas fulva. Microorganisms. 2025; 17, 13 (6): 1409. doi: 10.3390/microorganisms13061409
  34. Yang C., Wang L., Lv J., Wen Y., Gao Q., Qian F., Tian X., Zhu J., Zhu Z., Chen L., Du H. Effects of different carbapenemase and siderophore production on cefiderocol susceptibility in Klebsiella pneumoniae. Antimicrob Agents Chemother. 2024; 5, 68 (12): e0101924. doi: 10.1128/aac.01019-24
  35. Khasheii B., Mahmoodi P., Mohammadzadeh A. Siderophores: Importance in bacterial pathogenesis and applications in medicine and industry. Microbiol Res. 2021; 250: 126790. doi: 10.1016/j.micres.2021.126790
  36. Boiko O., Mukhamedzyanova R., Dotsenko Yu., Ramaeva A., Akhadov S., Zaporozhets N., Dmitrieva V., Karimov I. Synthesis of protein that is immunochemically similar to human lactoferrin by Klebsiella pneumonia. Archiv – Euromedika. 2022; 12 (2): 38–41. doi: 10.35630/2199-885X/2022/12/2.8
  37. Mathlouthi N.E.H., Kriaa A., Keskes L.A., Rhimi M., Gdoura R. Virulence Factors in Colorectal Cancer Metagenomes and Association of Microbial Siderophores with Advanced Stages. Microorganisms. 2022; 30, 10 (12): 2365. doi: 10.3390/microorganisms10122365.

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