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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" article-type="research-article" dtd-version="1.2" xml:lang="en"><front><journal-meta><journal-id journal-id-type="publisher-id">Ecological genetics</journal-id><journal-title-group><journal-title xml:lang="en">Ecological genetics</journal-title><trans-title-group xml:lang="ru"><trans-title>Экологическая генетика</trans-title></trans-title-group></journal-title-group><issn publication-format="print">1811-0932</issn><issn publication-format="electronic">2411-9202</issn><publisher><publisher-name xml:lang="en">Eco-Vector</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="publisher-id">624132</article-id><article-id pub-id-type="doi">10.17816/ecogen624132</article-id><article-categories><subj-group subj-group-type="toc-heading" xml:lang="en"><subject>Genetic basis of ecosystems evolution</subject></subj-group><subj-group subj-group-type="toc-heading" xml:lang="ru"><subject>Генетические основы эволюции экосистем</subject></subj-group><subj-group subj-group-type="article-type"><subject>Research Article</subject></subj-group></article-categories><title-group><article-title xml:lang="en">Senescence metabolomics of <italic>Nicotiana tabacum</italic> L. VBI-0 heterotrophic suspension cultures</article-title><trans-title-group xml:lang="ru"><trans-title>Метаболомика старения гетеротрофных суспензионных культур <italic>Nicotiana tabacum</italic> L. VBI-0</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-5862-2676</contrib-id><contrib-id contrib-id-type="spin">6399-2016</contrib-id><name-alternatives><name xml:lang="en"><surname>Puzanskiy</surname><given-names>Roman K.</given-names></name><name xml:lang="ru"><surname>Пузанский</surname><given-names>Роман Константинович</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>Cand. Sci. (Biology)</p></bio><bio xml:lang="ru"><p>канд. биол. наук</p></bio><email>puzansky@yandex.ru</email><xref ref-type="aff" rid="aff1"/><xref ref-type="aff" rid="aff2"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-5133-5175</contrib-id><contrib-id contrib-id-type="spin">9960-9527</contrib-id><name-alternatives><name xml:lang="en"><surname>Kirpichnikova</surname><given-names>Anastasiia A.</given-names></name><name xml:lang="ru"><surname>Кирпичникова</surname><given-names>Анастасия Алексеевна</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>nastin1972@mail.ru</email><xref ref-type="aff" rid="aff2"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-1778-2814</contrib-id><contrib-id contrib-id-type="spin">5637-5122</contrib-id><name-alternatives><name xml:lang="en"><surname>Shavarda</surname><given-names>Alexey L.</given-names></name><name xml:lang="ru"><surname>Шаварда</surname><given-names>Алексей Леонидович</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>Cand. Sci. (Bioligy)</p></bio><bio xml:lang="ru"><p>канд. биол. наук</p></bio><email>stachyopsis@gmail.com</email><xref ref-type="aff" rid="aff1"/><xref ref-type="aff" rid="aff2"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-2323-5235</contrib-id><contrib-id contrib-id-type="spin">9460-1278</contrib-id><name-alternatives><name xml:lang="en"><surname>Yemelyanov</surname><given-names>Vladislav V.</given-names></name><name xml:lang="ru"><surname>Емельянов</surname><given-names>Владислав Владимирович</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>Cand. Sci. (Bioligy), Associate Professor</p></bio><bio xml:lang="ru"><p>канд. биол. наук, доцент</p></bio><email>bootika@mail.ru</email><xref ref-type="aff" rid="aff2"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-3657-2986</contrib-id><contrib-id contrib-id-type="spin">7842-7611</contrib-id><name-alternatives><name xml:lang="en"><surname>Shishova</surname><given-names>Maria F.</given-names></name><name xml:lang="ru"><surname>Шишова</surname><given-names>Мария Федоровна</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>Dr. Sci. (Biology), Professor</p></bio><bio xml:lang="ru"><p>д-р биол. наук, профессор</p></bio><email>mshishova@mail.ru</email><uri>https://bio.spbu.ru/staff/id200_mfsh.php</uri><xref ref-type="aff" rid="aff2"/></contrib></contrib-group><aff-alternatives id="aff1"><aff><institution xml:lang="en">Komarov Botanical Institute of the Russian Academy of Sciences</institution></aff><aff><institution xml:lang="ru">Ботанический институт им. В.Л. Комарова Российской академии наук</institution></aff></aff-alternatives><aff-alternatives id="aff2"><aff><institution xml:lang="en">Saint Petersburg State University</institution></aff><aff><institution xml:lang="ru">Санкт-Петербургский государственный университет</institution></aff></aff-alternatives><pub-date date-type="preprint" iso-8601-date="2023-12-05" publication-format="electronic"><day>05</day><month>12</month><year>2023</year></pub-date><pub-date date-type="pub" iso-8601-date="2024-07-17" publication-format="electronic"><day>17</day><month>07</month><year>2024</year></pub-date><volume>22</volume><issue>2</issue><issue-title xml:lang="en"/><issue-title xml:lang="ru"/><fpage>161</fpage><lpage>173</lpage><history><date date-type="received" iso-8601-date="2023-12-01"><day>01</day><month>12</month><year>2023</year></date><date date-type="accepted" iso-8601-date="2023-12-05"><day>05</day><month>12</month><year>2023</year></date></history><permissions><copyright-statement xml:lang="en">Copyright ©; 2024, Eco-Vector</copyright-statement><copyright-statement xml:lang="ru">Copyright ©; 2024, Эко-Вектор</copyright-statement><copyright-year>2024</copyright-year><copyright-holder xml:lang="en">Eco-Vector</copyright-holder><copyright-holder xml:lang="ru">Эко-Вектор</copyright-holder><ali:free_to_read xmlns:ali="http://www.niso.org/schemas/ali/1.0/" start_date="2027-07-17"/><license><ali:license_ref xmlns:ali="http://www.niso.org/schemas/ali/1.0/">https://creativecommons.org/licenses/by-nc-nd/4.0/</ali:license_ref></license></permissions><self-uri xlink:href="https://journals.eco-vector.com/ecolgenet/article/view/624132">https://journals.eco-vector.com/ecolgenet/article/view/624132</self-uri><abstract xml:lang="en"><p><bold>BACKGROUND</bold>: Heterotrophic cell cultures are widely used as a model in plant biology. During a culture cycle the composition of the medium changes: the sucrose and other substrates are depleted, metabolism products are accumulated and the density increases. Finally, arrest of a growth is followed by cell death in a short time. These processes are accompanied with physiological alterations, corresponding to senescence.</p> <p><bold>AIM</bold>: To resolve metabolic features of tobacco cells in growing and stationary senescent suspension cultures VBI-0.</p> <p><bold>MATERIALS AND METHODS</bold>: <italic>Nicotiana tabacum</italic> VBI-0 cells were cultured in suspension MS medium supplied with 3% sucrose. Cells were sampled at 7<sup>th</sup> day, during intensive growth, and at 28<sup>th</sup> day, when the culture was in the stationary phase. The GC-MS method was used to profile the metabolites.</p> <p><bold>RESULTS</bold>: Sucrose depletion in media caused starvation of heterotrophic tobacco cell culture and was associated with a decrease in the accumulation of free amino acids. At the same time, the level of pentoses and complex sugars, including sucrose, increased, while the levels of glucose and fructose were not changed significantly and levels of hexose phosphates decreased. During culture senescence cells showed higher levels of accumulation of malate, pyruvate and some other carboxylates.</p> <p><bold>CONCLUSIONS</bold>: The metabolomic data indicate that culture senescence was associated with a drop in amino acids metabolism, a decrease in the activity of the upper part of glycolysis, and the accumulation of complex sugars, pentoses and carboxylates.</p></abstract><trans-abstract xml:lang="ru"><p>Гетеротрофные клеточные культуры широко используют в качестве модельных объектов в биологии растений. В процессе развития культуры меняется состав среды: истощается субстрат, накапливаются продукты метаболизма, растет плотность клеток. В финальной фазе рост останавливается и через непродолжительное время культура погибает. Эти процессы сопровождаются физиологическими изменениями клеток, которые можно назвать старением культуры. Методом газовой хроматографии, сопряженной с масс-спектрометрией, было проведено профилирование метаболитов гетеротрофных клеток <italic>Nicotiana tabacum</italic> VBI-0, поддерживаемых в суспензионной культуре. Сравнивали клетки культур возрастом 7 сут, во время интенсивного роста биомассы, и 28 сут, когда культура находилась в стационарной фазе. Было установлено, что старение сопряжено с падением накопления аминокислот. В то же время возрастал уровень пентоз и сложных сахаров, включая сахарозу, тогда как уровень глюкозы, фруктозы и сахарофосфатов снижался. Для стареющих культур характерен больший уровень накопления малата, пирувата и некоторых других карбоксилатов. Таким образом, полученные метаболомные данные свидетельствуют, что старение сопряжено с изменением обмена аминокислот, снижением активности начального этапа гликолиза, накоплением сложных сахаров, пентоз и карбоксилатов.</p></trans-abstract><kwd-group xml:lang="en"><kwd>Nicotiana tabacum VBI-0</kwd><kwd>metabolomics</kwd><kwd>plant cell culture</kwd><kwd>senescence</kwd><kwd>carbon starvation</kwd></kwd-group><kwd-group xml:lang="ru"><kwd>Nicotiana tabacum VBI-0</kwd><kwd>метаболомика</kwd><kwd>старение</kwd><kwd>суспензионная культура</kwd></kwd-group><funding-group><award-group><funding-source><institution-wrap><institution xml:lang="ru">Российский научный фонд</institution></institution-wrap><institution-wrap><institution xml:lang="en">Russian Science Foundation</institution></institution-wrap></funding-source><award-id>23-24-00393</award-id></award-group></funding-group></article-meta></front><body></body><back><ref-list><ref id="B1"><label>1.</label><citation-alternatives><mixed-citation xml:lang="en">Imseng N, Schillberg S, Schürch C, et al. 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