Phenotypic and molecular genetic properties of Escherichia coli clinical strains isolated from patients with urological diseases


Дәйексөз келтіру

Толық мәтін

Ашық рұқсат Ашық рұқсат
Рұқсат жабық Рұқсат берілді
Рұқсат жабық Рұқсат ақылы немесе тек жазылушылар үшін

Аннотация

Objective. Microbiological and molecular genetic characterization resistance profiles of Escherichia coli strains isolated in a pilot singlecenter clinical study from patients of the urological department in Yaroslavl in 2016-2017. Materials and methods. Clinical strains of E. coli (n=18) were isolated from the urine of women aged 23-84 years. The mobility of bacteria, colicinogenicity, and sensitivity to lactobacilli antagonism, biofilm formation, and susceptibility to antimicrobials were evaluated. The antibiotic resistance genes were identified. Results. The E. coli strains had a wide heterogeneity in mobility, colicinogenicity, and biofilm formation. They were sensitive to Lactobacillus acidophilus antagonism, as well as to nitrofurantoin, meropenem, fosfomycin and the main functional classes of disinfectants and antiseptics, but are resistant to beta-lactams, fluoroquinolones and aminoglycosides. The mcr-1 gene providing resistance to colistin was identified in two strains. Conclusions. Analysis of genetic antibiotic resistance determinants revealed the genetic diversity of clinical E. coli strains. The obtained data on the strain sensitivity to antibacterials and disinfectants can be used by clinicians in choosing the optimal antibiotic therapy and treatment of abiotic surfaces in urological departments.

Толық мәтін

Рұқсат жабық

Авторлар туралы

P. Slukin

State Research Center for Applied Microbiology and Biotechnology

E. Svetoch

State Research Center for Applied Microbiology and Biotechnology

E. Aslanyan

State Research Center for Applied Microbiology and Biotechnology

E. Astashkin

State Research Center for Applied Microbiology and Biotechnology

M. Ershova

Infectious Clinical Hospital No. 1, Yaroslavl

E. Poletaeva

Infectious Clinical Hospital No. 1, Yaroslavl

A. Shepelin

State Research Center for Applied Microbiology and Biotechnology

N. Fursova

State Research Center for Applied Microbiology and Biotechnology

Әдебиет тізімі

  1. Белоглазова И.П., Трошина А.А., Потешкина Н.Г. Инфекции мочевыводящих путей: Часть 1. Лечебное дело. 2018;1:18-25
  2. Leccese Terraf M.C., Juarez Tomas M.S., Rault L., et.al. In vitro effect of vaginal lactobacilli on the growth and adhesion abilities of uropathogenic Escherichia coli. Archives of Microbiology. 2017;199(5):767-774. doi: 10.1007/s00203-016-1336-z.
  3. Delley M., Bruttin A., Richard M., et.al. In vitro activity of commercial probiotic Lactobacillus strains against uropathogenic Escherichia coli. FEMS Microbiology Letters. 2015;362(13):fnv096. doi: 10.1093/femsle/ fnv096.
  4. Htitt P., Lapp E., Stsepetova J., et al. Characterisation of probiotic properties in human vaginal lactobacilli strains. Microb Ecol Health Dis. 2016;27:30484. doi: 10.3402/mehd.v27.30484.
  5. Shim Y.H., Lee S.J., Lee J.W. Antimicrobial activity of lactobacillus strains against uropathogens. Pediatr Int. 2016;58(10):1009-1013. Doi: 10.1111/ ped.12949.
  6. Перепанова Т.С., Козлов Р.С., Дехнич А.В., и др. Эмпирический выбор антимикробных препаратов при неосложненной инфекции нижних мочевых путей: исследование резистентности возбудителей «ДАРМИС». Экспериментальная и клиническая урология. 2012;2:78-83
  7. Terlizzi M.E., Gribaudo G., Maffei M.E. UroPathogenic Escherichia coli (UPEC) infections: virulence factors, bladder responses, antibiotic, and non-antibiotic Antimicrobial Strategies. Front Microbiol. 2017;8:1566. doi: 10.3389/fmicb.2017.01566.
  8. Yang X., Sha K., Xu G., et al. Subinhibitory concentrations of allicin decrease uropathogenic Escherichia coli (UPEC) biofilm formation, adhesion ability, and swimming motility. Int J Mol Sci. 2016;17(7). pii: E979. Doi: 10.3390/ ijms17070979.
  9. Micenkova L., Bosak J., Kucera J., et al. Colicin Z, a structurally and functionally novel colicin type that selectively kills enteroinvasive Escherichia coli and Shigella strains. Sci Rep. 2019;9(1):11127. doi: 10.1038/s41598-019-47488-8.
  10. Reis-Teixeira F.B.D., Alves V.F., de Martinis E.C.P. Growth, viability and architecture of biofilms of Listeria monocytogenes formed on abiotic surfaces. Braz J Microbiol. 2017;48(3):587-591. Doi: 10.1016/j. bjm.2017.01.004.
  11. Ceccarelli D., Hesp A., van der Goot J., et al. Antimicrobial resistance prevalence in commensal Escherichia coli from broilers, fattening turkeys, fattening pigs and veal calves in European countries and association with antimicrobial usage at country level. J Med Microbiol. 2020. Doi: 10.1099/ jmm.0.001176.
  12. Детушева Е.В., Родин В.Б., Слукин П.В., и др. Чувствительность нозокомиальных штаммов K. pneumoniae, P. aeruginosa, A. baumannii и P. mirabilis к антисептику на основе хлоргексидина. Клиническая микробиология и антимикробная химиотерапия. 2015;1(17):57-66
  13. Tian E., Muhammad I., Hu W., et al. Tentative epidemiologic cut-off value and resistant characteristic detection of apramycin against Escherichia coli from chickens. FEMS Microbiol Lett. 2019;366(16). pii: fnz196. doi: 10.1093/femsle/fnz196.
  14. Eckert C., Gautier V., Arlet G. DNA sequence analysis of the genetic environment of various blaCTX-M genes. J Antimicrob Chemother. 2006;57(1):14-23.
  15. Edelstein M., Pimkin M., Palagin I., et.al. Prevalence and molecular epidemiology of CTX-M extended-spectrum beta-lactamase-producing Escherichia coli and Klebsiella pneumoniae in Russian hospitals. Antimicrob Agents Chemother. 2003;47(12):3724-3732.
  16. Priamchuk S.D., Fursova N.K., Abaev I.V., et al. Genetic determinants of antibacterial resistance among nosocomial Escherichia coli, Klebsiella spp., and Enterobacter spp. isolates collected in Russia within 2003-2007. Antibiot Khimioter. 2010;55(9-10):3-10.
  17. Hujer K.M., Hujer A.M., Hulten E.A., et al. Analysis of antibiotic resistance genes in multidrug-resistant Acinetobacter sp. isolates from military and civilian patients treated at the Walter Reed Army Medical Center. Antimicrob Agents Chemother. 2006;50(12):4114-4123.
  18. Yang J., Chen Y., Jia X., et al. Dissemination and characterization of NDM-1-producing Acinetobacter pittii in an intensive care unit in China. Clin Microbiol Infect. 2012;18(12):E506-513.
  19. Bankevich A., Nurk S., Antipov D., et al. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 2012;19(5):455-477. doi: 10.1089/cmb.2012.0021.
  20. Angiuoli S.V., Gussman A., Klimke W., et al. Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation. OMICS. 2008;12(2):137-141. doi: 10.1089/omi.2008.0017.
  21. Zankari E., Hasman H., Cosentino S., et al. Identification of acquired antimicrobial resistance genes. J Antimicrob Chemother. 2012;67(11):2640- 2644. doi: 10.1093/jac/dks261.
  22. Santo E., Macedo C., Marin J.M. Virulence factors of uropathogenic Escherichia coli from a university hospital in Ribeirao Preto, Sao Paulo, Brazil. Rev Inst Med Trop Sao Paulo. 2006;48(4):185-188.
  23. Olorunmola F.O., Kolawole D.O., Lamikanra A. Antibiotic resistance and virulence properties in Escherichia coli strains from cases of urinary tract infections. Afr J Infect Dis. 2013;7(1):1-7.
  24. Gizatullina Yu.S., Kuznetsova M. V. Biofilm formation by uropathogenic strains of Escherichia coli on various abiotic surfaces. Bulletin of Perm University. Series: Biology. 2017;2:185-192. Russian (Гизатуллина Ю.С., Кузнецова М.В. Формирование биопленок уропатогенными штаммами Escherichia coli на различных абиотических поверхностях. Вестник Пермского университета. Серия: Биология. 2017;2:185-192).
  25. Ny S., Edquist P., Dumpis U., et al. NoDARS UTI Study Group. Antimicrobial resistance of Escherichia coli isolates from outpatient urinary tract infections in women in six European countries including Russia. J Glob Antimicrob Resist. 2018;17:25-34.
  26. Yu H., Qu F., Shan B., et al. Detection of the mcr-1 colistin resistance gene in carbapenem-resistant Enterobacteriaceae from different hospitals in China. Antimicrob Agents Chemother. 2016;60(8):5033-5035. doi: 10.1128/AAC.00440-16.
  27. Henly E.L., Dowling J.A.R., Maingay J.B., et.al. Biocide exposure induces changes in susceptibility, pathogenicity, and biofilm formation in uropathogenic Escherichia coli. Antimicrob Agents Chemother. 2019;63(3). pii: e01892-18. doi: 10.1128/AAC.01892-18.

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