Genetic markers for HIV infection progression and secondary diseases development


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Abstract

A number of factors, including human genome variability that determines the specific features of an immune response to virus entry and development in the body, influence a risk for and progression rate of HIV infection. The paper reviews studies of the genetic polymorphisms affecting the risk and progression rate of HIV infection, as well as their role in the development of opportunistic infections, including tuberculosis (TB). The studies of the role of genetic markers in patients with HIV/TB coinfection have provided evidence that a number of genetic polymorphisms affect the risk of developing active TB in patients with HIV without regard to other risk factors. However, the results obtained at this moment cannot be used in clinical practice to improve the diagnosis and prevention of TB in HIV-infected patients, because these require specification and further investigations on large patient samples and among representatives of different ethnic groups.

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About the authors

E. I Kulabukhova

Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Welfare

Email: ekulabukhova@mail.ru
Moscow

A. V Kravchenko

Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Welfare

Email: kravtchenko@hivrussia.net
Moscow

V. N Zimina

Peoples' Friendship University of Russia

Email: vera-zim@yandex.ru
Moscow

A. V Pokrovskaya

Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Welfare

Email: pokrovskaya_av@mail.ru
Moscow

References

  1. Grabar S., Selinger-Leneman H., Abgrall S., Pialoux G., Weiss L., Costagliola D. Prevalence and comparative characteristics of long-term nonprogressors and HIV controller patients in the French Hospital Database on HIV. AIDS 2009; 23(9): 1163-1169.
  2. Hendrickson S.L., Jacobson L.P., Nelson G.W., Phair J.P., Lautenberger J., Johnson R.C., Kingsley L., Margolick J.B., Detels R., Goedert J.J., O’Brien S.J. Host genetic influences on highly active antiretroviral therapy efficacy and AIDS-free survival. J. Acquir. Immune Defic. Syndr. 2008; 48(3): 263-271.
  3. Хоффман К., Рокштро Ю.К. (ред.). ВИЧ 2014/2015. Гамбург, Бонн: Medizin Fokus, 2014. 924 с.
  4. Langford S.E., Ananworanich J., Cooper D.A. Predictors of disease progression in HIV infection: a review. AIDS Res. Ther. 2007; 4: 11-25.
  5. Покровский В.В., ред. ВИЧ-инфекция и СПИД. Национальное руководство. М.: ГЭОТАР-Медиа, 2013. 608 с.
  6. The International HapMap 3 Consortium, Altshuler D.M., Gibbs R.A., Peltonen L., Dermitzakis E., Schaffner S.F., Yu F., de Bakker P.I.W., Deloukas P., Gabriel S.B., Gwilliam R., Hunt S., Inouye M., Jia X., Palotie A., Parkin M., Whittaker P., Chang K., Hawes A., Lewis L.R., Ren Y., Wheeler D., Gibbs R.A., Muzny D.M., Barnes Ch., Darvishi K., Hurles M., Korn J.M., Kristiansson K., Lee Ch., McCarrol S.A., Nemesh J., Keinan A., Montgomery S.B., Pollack S., Price A.L., Soranzo N., Bonnen P.E., Gibbs R.A., Gonzaga-Jauregui C., Keinan A., Price A.L., Anttila V., Brodeur W., Daly M.J., Leslie S., McVean G., Moutsianas L., Nguyen H., Schaffner S.F., Zhang Q., Ghori M.J.R., McGinnis R., McLaren W., Takeuchi F., Grossman S.R., Shlyakhter I., Hostetter E.B., Sabeti P.C., Adebamowo C.A., Foster M.W., Gordon D.R., Licinio J., Manca M., Marshall A., Matsuda I., Ngare D., Wang V.O., Reddy D., Rotimi Ch.N., Royal Ch.D., Sharp R.R., Zeng Ch., Brooks L.D., McEwen J.E. Integrating common and rare genetic variation in diverse human populations. Nature 2010; 467(7311): 52-58.
  7. Мутовин Г.Р. Клиническая генетика. Геномика и протеомика наследственной патологии. Учебное пособие. 3-е изд., перераб. и доп. М.: ГЭОТАР-Медиа, 2010. 832 с.
  8. Бородина Т. Методы детекции SNP. Практическая молекулярная биология, 2001. http://molbiol.edu.ru/ review/04_03.html
  9. Гинтер Е.К. Медицинская генетика. Учебник. М: Медицина, 2003. 339 с.
  10. Sobieszczyk M.E., Lingappa J.R., McElrath M.J. Host genetic polymorphisms associated with innate immune factors and HIV-1. Curr. Opin. HIV AIDS 2011; 6(5): 427434.
  11. Миронов К.О., Дунаева Е.А., Дрибноходова О.П., Шипулин Г.А. Определение нуклеотидных полиморфизмов с помощью систем генетического анализа, основанных на пиросеквенировании. Лабораторная медицина 2013; 12: 75-79.
  12. Pinney J.W., Dickerson J.E., Fu W., Sanders-Beer B.E., Ptak R.G., Robertson D.L. HIV-host interactions: a map of viral perturbation of the host system. AIDS 2009; 23(5): 549-554.
  13. Бобкова М.Р. ВИЧ-инфекция и генетика человека. Тер. архив 2009; 81(12): 78-84.
  14. Coloccini R.S., Dilernia D., Ghiglione Y., Turk G., Laufer N., Rubio A., Soclas M.E., Figueroa M.I., Sued O., Cahn P., Salomôn H., Mangano A., Pando M.A. Host genetic factors associated with symptomatic primary acute HIV-infection and disease progression among Argentinean seroconverters. PLoS One 2014; 9(11): e113146.
  15. Reiche E.M., Bonametti A.M., Voltarelli J.C., Morimoto H.K., Watanabe M.A. Genetic Polymorphisms in the Chemokine and Chemokine Receptors: Impact on Clinical Course and Therapy of the Human Immunodeficiency Virus Type 1 Infection (HIV-1). Curr. Med. Chem. 2007; 14(12): 1325-1334.
  16. Liu S., Zhu H. Association between polymorphism of SDF1 (CXCL12) gene and HIV-1 susceptibility: a meta-analysis. Curr. HIV Res. 2011; 9(2): 112-119.
  17. Mahajan S.D., Agosto-Mojica A., Aalinkeel R., Reynolds J.L., Nair B.B., Sykes D.E., Martinez J., Adams J., Singh N., Bernstein Z., Hsiao C.B., Schwartz S.A. Role of chemokine and cytokine polymorphisms in the progression of HIV-1 disease. Biochem. Biophys. Res. Commun. 2010; 396(2): 348-352.
  18. Compaore T.R., Soubeiga S.T., Ouattara A.K., Obiri-Yeboah D., Tchelougou D., Maiga M., Assih M., Bisseye C., Bakouan D., Compaore I.P., Dembele A., Martinson J., Simpore J. APOBEC3G Variants and Protection against HIV-1 Infection in Burkina Faso. PLoS One 2016; 11(1): e0146386.
  19. Хаитов P.M. Иммунология. Учебник. М.: ГЭОТАР-Медиа, 2015. 528 с.
  20. Киреев Д.Е., Куевда Д.А. Разработка и внедрение в лабораторную практику набора реагентов для обнаружения аллели HLA B*5701 главного комплекса гистосовместимости с целью исключения случаев возникновения реакции гиперчувствительности при использовании абакавирсодержащей терапии. В кн: Покровский В.И., ред. Молекулярная диагностика - 2010. М.: ООО «Рекламное Агентство «ЭйВиДжи», 2010; V: 8-11.
  21. Nolan D., Gaudieri S., John M., Mallal S. Impact of Host Genetics on HIV Disease Progression and Treatment: New Conflicts on an Ancient Battleground. AIDS 2004; 18(9): 1231-1240.
  22. Bashirova A.A., Thomas R., Carrington M. HLA/KIR Restraint of HIV: Surviving the Fittest. Annu. Rev. Immunol. 2011; 29: 295-317.
  23. Boulet S., Kleyman M., Kim J.Y., Kamya P., Sharafi S., Simic N., Bruneau J., Routy J.P., Tsoukas C.M., Bernard N.F. A combined genotype of KIR3DL1 high expressing alleles and HLA-B*57 is associated with a reduced risk of HIV infection. AIDS 2008; 22(12): 1487-1491.
  24. Pérez-Nûnez By D., Martinez-Quiles N. Genetic Factors that Influence HIV Infection: The Role of the Major Histocompatibility Complex System. In: Chang T.L., ed. HIV-Host Interactions. INTECH 2011; 9: 205-238.
  25. Friedrich T.C., Dodds E.J., Yant L.J., Vojnov L., Rudersdorf R., Cullen C., Evans D.T., Desrosiers R.C., Mothé B.R., Sidney J., Sette A., Kunstman K., Wolinsky S., Piatak M., Lifson J., Hughes A.L., Wilson N., O’Connor D.H., Watkins D.I. Reversion of CTL escape-variant immunodeficiency viruses in vivo. Nat. Med. 2004; 10(3): 275-281.
  26. Leslie A.J., Pfafferott K.J., Chetty P., Draenert R., Addo M.M., Feeney M., Tang Y., Holmes E.C., Allen T., Prado J.G., Altfeld M., Brander C., Dixon C., Ramduth D., Jeena P., Thomas S.A., St. John A., Roach T.A., Kupfer B., Luzzi G., Edwards A., Taylor G., Lyall H., Tudor-Williams G., Novelli V., Martinez-Picado J., Kiepiela P., Walker B.D., Goulder P.J. HIV evolution: CTL escape mutation and reversion after transmission. Nat. Med. 2004; 10(3): 282-289.
  27. Saikia B., Wanchu A., Mahakur S., Bind M., Sarkar K., Minz R.W. Analysis of HLA association among North Indian HIV-positive individuals co-infected with Mycobacterium tuberculosis. Lung India 2015; 32(5): 449-452.
  28. Rosentul D.C., Plantinga T.S., Papadopoulos A., Joosten L.A., Antoniadou A., Venselaar H. Kullberg B.J., van der Meer J.W., Giamarellos-Bourboulis E.J., Netea M.G. Variation in genes of ß-glucan recognition pathway and susceptibility to opportunistic infections in HIV-positive patients. Immunol. Invest. 2011; 40(7-8): 735-750.
  29. An P., Li R., Wang J.M., Yoshimura T., Takahashi M., Samudralal R., O’Brien S.J., Phair J., Goedert J.J., Kirk G.D., Troyer J.L., Sezgin E., Buchbinder S.P., Donfield
  30. , Nelson G.W., Winkler C.A. Role of Exonic Variation in Chemokine Receptor Genes on AIDS: CCRL2 F167Y Association with Pneumocystis Pneumonia. PLoS Genet. 2011; 7(10): e1002328.
  31. Alagarasu K., Selvaraj P., Swaminathan S., Raghavan S., Narendran G., Narayanan P.R. Mannose binding lectin gene variants and susceptibility to tuberculosis in HIV-1 infected patients of South India. Tuberculosis (Edinb.) 2007; 87(6): 535-543.
  32. Sezgin E., van Natta M.L., Ahuja A., Lyon A., Srivastava
  33. , Troyer J.L., O’Brien S.J., Jabs D.A.; Studies of the Ocular Complications of AIDS Research Group. Association of Host Genetic Risk Factors with the Course of Cytomegalovirus Retinitis in Patients Infected with HIV. Am. J. Ophthalmol. 2011; 151(6): 999-1006.
  34. Приоритетные аспекты изучения проблемы ТБ/ВИЧ в условиях высокой распространенности ВИЧ-инфекции и ограниченных ресурсов. Женева: ВОЗ, 2011. http://www. stoptb.org/wg/tb_hiv/assets/documents/priorityresearch_ russian.pdf
  35. Рудко А.А., Фрейдина М.Б., Пузырева В.П. Наследственная предрасположенность туберкулёзу. Молекулярная медицина 2011; 3: 3-10.
  36. Романов А.О, Беляева Т.В., Красильщикова И.В. Частота встречаемости полиморфизма +230G/A гена MBL у жителей Санкт-Петербурга. Medline.ru. 2006; 7(1): 372-377.
  37. Catano G., Agan B.K., Kulkarni H., Telles V., Marconi V.C., Dolan M.J., Ahuja S.K. Independent Effects of Genetic Variationsin Mannose-Binding Lectin Influence the Course of HIV Disease: The Advantage of Heterozygosity for Coding Mutations. J. Infect. Dis. 2008; 198(1): 72-80.
  38. Zhang Y., Jiang T., Yang X., Xue Y., Wang C., Liu J., Zhang X., Chen Z., Zhao M., Li J.C. Toll-Like Receptor -1, -2, and -6 Polymorphisms and Pulmonary Tuberculosis Susceptibility: A Systematic Review and Meta-Analysis. PLoS One 2013; 8(5): e63357.
  39. Pulido I., Leal M., Genebat M., Pacheco Y.M., Sâez M.E., Soriano-Sarabia N. The TLR4 ASP299GLY polymorphism is a risk factor for active tuberculosis in Caucasian HIV-infected patients. Curr. HIV Res. 2010; 8(3): 253-258.
  40. Davila S., Hibberd M.L., Hari Dass R., Wong H.E., Sahiratmadja E., Bonnard C., Alisjahbana B., Szeszko J.S., Balabanova Y., Drobniewski F., van Crevel R., van de Vosse E., Nejentsev S., Ottenhoff T.H., Seielstad M. Genetic Association and Expression Studies Indicate a Role of Toll-Like Receptor 8 in Pulmonary Tuberculosis. PLoS Genet. 2008; 4(10): e1000218.
  41. Oh D.Y., Taube S., Hamouda O., Kücherer C., Poggensee G., Jessen H., Eckert J.K., Neumann K., Storek A., Pouliot M., Borgeat P., Oh N., Schreier E., Pruss A., Hattermann K., Schumann R.R. A functional toll-like receptor 8 variant is associated with HIV disease restriction. J. Infect. Dis. 2008; 198(5): 701-709.
  42. Pontillo A., Carvalho M.S., Kamada A.J., Moura R., Schindler H.C., Duarte A.J., Crovella S. Susceptibility to Mycobacterium tuberculosis infection in HIV-positive patients is associated with CARD 8 genetic variant. J. Acquir. Immune Defic. Syndr. 2013; 63(2): 147-151.
  43. Affandia J.S., Kumarb M., Agarwalc U., Singhb S., Pricea P.. The search for a genetic factor associating with immune restoration disease in HIV patients co-infected with Mycobacterium tuberculosis. Dis Markers. 2013; 34(6): 445-449

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