К ПОНИМАНИЮ МЕХАНИЗМОВ ЭПИГЕНЕТИЧЕСКОЙ РЕГУЛЯЦИИ: ЧАСТЬ I. ЭВОЛЮЦИОННЫЙ ВЗГЛЯД НА PcG-ЗАВИСИМУЮ РЕПРЕССИЮ ГЕНОВ
- Авторы: Федорова Е.М.1, Родионов А.В.2
-
Учреждения:
- Институт Физиологии им. И. П. Павлова РАН, Санкт-Петербург, РФ
- Ботанический институт им. В.Л. Комарова РАН, Санкт-Петербург, РФ
- Выпуск: Том 6, № 1 (2008)
- Страницы: 12-19
- Раздел: Статьи
- Статья получена: 14.11.2016
- Статья опубликована: 15.03.2008
- URL: https://journals.eco-vector.com/ecolgenet/article/view/5401
- DOI: https://doi.org/10.17816/ecogen6112-19
- ID: 5401
Цитировать
Полный текст
Аннотация
Эволюционно консервативные белки группы PcG обеспечивают стабильную эпигенетическую репрессию транскрипции, инициированную на более ранних этапах короткоживущими регуляторными белками. Точный механизм PcG-зависимой репрессии пока не расшифрован; в данной работе мы приводим существующие модели этой репрессии. Мы также кратко суммируем имеющиеся данные о белках группы PcG и их роли в различных процессах и рассматриваем эволюцию комплексов PRC1 и PRC2.
Ключевые слова
Об авторах
Елена Михайловна Федорова
Институт Физиологии им. И. П. Павлова РАН, Санкт-Петербург, РФ
Email: ellena_fedorova@yahoo.com
Александр Викентьевич Родионов
Ботанический институт им. В.Л. Комарова РАН, Санкт-Петербург, РФ
Email: avrodionov@mail.ru
Список литературы
- Bannister A.J., Zegerman P., Partridge J.F. et al., 2001. Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain//Nature. Vol. 410. P. 120-124.
- Bantignies F., Grimaud C., Lavrov S. et al., 2003. Inheritance of Polycomb-dependent chromosomal interactions in Drosophila//Genes Dev. Vol. 17. P. 2406-2420.
- Bienz M., Mutter J., 1995. Transcriptional silencing of homeotic genes in Drosophila//Bioessays. Vol. 17. P. 775-784.
- Birve A., Sengupta A.K, Beuchle D. et al., 2001. Su(z)12, a novel Drosophila Polycomb group gene that is conserved in vertebrates and plants//Development. Vol. 128. P. 3371-3379.
- Boudreault A.A., Cronier D., Selleck W. et al., 2003. Yeast enhancer of polycomb defines global Esal-dependent acetylation of chromatin//Genes Dev. Vol. 17. P. 1415-1428.
- Boyer L.A., Plath K., Zeitlinger J. et al., 2006. Polycomb complexes repress developmental regulators in murine embryonic stem cells//Nature. Vol. 441. R 349-353.
- Bracken A.P., Dietrich N., Pasini D., et al., 2006. Genome-wide mapping of Polycomb target genes unravels their roles in cell fate transitions//Genes Dev. Vol. 20. P. 1123-1136.
- Breiling A., Bonte E., Ferrari S. et al., 1999. The Drosophila polycomb protein interacts with nucleosomal core particles in vitro via its repression domain//Mol Cell Biol. Vol. 19. P. 8451-8460.
- Breiling A., Sessa L., Orlando V., 2007. Biology of polycomb and trithorax group proteins//Int. Rev. Cytol.Vol. 258. P. 83-136.
- Brown J.L., Mucci D., Whiteley M. et al., 1998. The Drosophila Polycomb group gene pleiohomeotic encodes a DNA binding protein with homology to the transcription factor YY1//Mol Cell. Vol. 1. P. 1057-1064.
- Buchenau P., Hodgson J., Strutt H., Arndt-Jovin D. J., 1998. The distribution of polycomb-group proteins during cell division and development in Drosophila embryos: impact on models for silencing//J. Cell. Biol. Vol. 141. P. 469-481.
- Busturia file:///2.Busturia A., Wightman C.D., Sakonju S., 1997. A silencer is required for maintenance of transcriptional repression throughout Drosophila development // Development. Vol. 124. P. 4343-4350.
- Casares F., Sanchez-Herrero E., 1995. Regulation of the infraabdominal regions of the bithorax complex of Drosophila by gap genes//Development. Vol. 121. P. 1855-1866.
- Cavalli G., Paro R., 1998. The Drosophila Fab-7 chromosomal element conveys epigenetic inheritance during mitosis and meiosis//Cell. Vol. 93. P. 505-518.
- Ceol C.J., Horvitz H.R., 2004. A new class of C. elegans synMuv genes implicates a Tip60/NuA4-like HAT complex as a negative regulator of Ras signaling//Dev. Cell. Vol. 6. P. 563-576.
- Czermin В., Melfi R., McCabe D. et al., 2002. Drosophila enhancer of Zeste/ESC complexes have a histone H3 methyltransferase activity that marks chromosomal Polycomb sites//Cell. Vol. 111. P. 185-196.
- Fedorova E., Sadoni N., Dahlsveen I.К. et al., 2008. The nuclear organization of Polycomb/rithorax group response elements in larval tissues of Drosophila melanogaster//Chromosome Res: in presss.
- Felsenfeld G., 1996. Chromatin unfolds//Cell. Vol. 86. P. 13-19.
- Ficz file:///9.Ficz G., Heintzmann R., Arndt-Jovin D.J., 2005. Polycomb group protein complexes exchange rapidly in living Drosophila // Development. Vol. 132. P. 3963-3976.
- Fischle W., Wang Y., Jacobs S. A. et al., 2003. Molecular basis for the discrimination of repressive methyl-lysine marks in histone H3 by Polycomb and HP1 chromodomains//Genes Dev. Vol. 17. P. 1870-1881.
- Francis N.J., Kingston R.E., 2001. Mechanisms of transcriptional memory//Nat Rev Mol Cell Biol. Vol. 2. P. 409-421.
- Francis N.J., Saurin A.J., Shao Z., Kingston R.E., 2001. Reconstitution of a functional core polycomb repressive complex//Mol Cell. Vol. 8. P. 545-556.
- Franke A., DeCamillis M., link D. et al., 1992. Polycomb and polyhomeotic are constituents of a multimeric protein complex in chromatin of Drosophila melanogaster//Embo J. Vol. 11. P. 2941 -2950.
- Glockner G., Eichinger E., Szafranski К. et al., 2002. Sequence and analysis of chromosome 2 of Dictyostelium discoideum//Nature. Vol.418. P. 79-85.
- Grimaud C., Bantignies F., Pal-Bhadra M. et al., 2006. RNAi components are required for nuclear clustering of Polycomb group response elements//Cell. Vol. 124. P. 957-971.
- Ingham P.W., Martinez Arias A., 1992. Boundaries and fields in early embryos//Cell. Vol. 68. P. 221-235.
- IsonoK., Fujimura Y., ShingaJ. et al., 2005. Mammalian polyhomeotic homologues Phc2 and Phc 1 act in synergy to mediate polycomb repression of Hox genes//Mol. Cell. Biol. Vol. 25. P. 6694-6706.
- Jacobs J.J., van Lohuizen M., 2002. Polycomb repression: from cellular memory to cellular proliferation and cancer//Biochim Biophys Acta. Vol. 1602. P. 151-161.
- Keeling P.J., Burger G., Durnford D.G. et al., 2005. The tree of eukaryotes//Trends Ecol Evol. Vol. 20. P. 670-676.
- Ketel C.S., Andersen E.F., Vargas M.L. et al., 2005. Subunit contributions to histone methyltransferase activities of fly and worm polycomb group complexes//Mol Cell Biol. Vol. 25. P. 6857-6868.
- Klymenko Т., Рарр В., Fischle W. et al., 2006. A Polycomb group protein complex with sequence-specific DNA-binding and selective methyl-lysine-binding activities//Genes Dev. Vol. 20. P. 1110-1122.
- Koonin E.V., Zhou S., Lucchesi J.C., 1995. The chromo superfamily: new members, duplication of the chromo domain and possible role in delivering transcription regulators to chromatin//Nucleic Acids Res. Vol. 23. P. 4229-4233.
- Korf I., Fan Y., Strome S., 1998. The Polycomb group in Caenorhabditis elegans and maternal control of germline development//Development. Vol. 125. P. 2469-2478.
- Kuzmichev A., Margueron R., Vaquero A. et al., 2005. Composition and histone substrates of polycomb repressive group complexes change during cellular differentiation//Proc Natl Acad Sci USA. Vol. 102. P. 1859-1864.
- Lachner M., O'Carroll D., Rea S. et al., 2001. Methylation of histone H3 lysine 9 creates a binding site for HP 1 proteins//Nature. Vol. 410. P. 116-120.
- Lee T.I., Jenner R.G., Boyer E.A. et al., 2006. Control of developmental regulators by Polycomb in human embryonic stem cells//Cell. Vol. 125. P. 301-313.
- Levine S.S., Weiss A., Erdjument-Bromage H. et al., 2002. The core of the polycomb repressive complex is compositionally and functionally conserved in flies and humans//Mol Cell Biol. Vol. 22. P. 6070-6078.
- Liu Y., Taverna S.D., Muratore T.L. et al., 2007. RNAi-dependent H3K27 methylation is required for heterochromatin formation and DNA elimination in Tetrahymena//Genes Dev. Vol. 21. P. 1530-1545.
- Eoftus B.J., Fung E., Roncaglia P. et al., 2005. The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans//Science. Vol. 307. P. 1321-1324.
- Makarevich G., Leroy O., Akinci U. et al., 2006. Different Polycomb group complexes regulate common target genes in Arabidopsis//EMBO Rep. Vol. 7. P. 947-952.
- Martinez A.M., Cavalli G., 2006. The role of polycomb group proteins in cell cycle regulation during development//Cell. Cycle. Vol. 5. P. 1189-1197.
- Messmer file:///2.Messmer S., Franke A., Paro R., 1992. Analysis of the functional role of the Polycomb chromo domain in Drosophila melanogaster // Genes Dev. Vol. 6. P. 1241-1254.
- Muller J., Hart C.M., Francis N.J. et al., 2002. Histone methyltransferase activity of a Drosophila Polycomb group repressor complex//Cell. Vol. 111. P. 197-208.
- Muller J., Kassis J.A., 2006. Polycomb response elements and targeting of Polycomb group proteins in Drosophila//Curr. Opin. Genet. Dev. Vol. 16. P. 476-484.
- Nekrasov M., Wild В., Muller J., 2005. Nucleosome binding and histone methyltransferase activity of Drosophila PRC2//EMBO Rep. Vol. 6. P. 348-353.
- Ng J., Hart C.M., Morgan K., Simon J.A., 2000. A Drosophila ESC-E(Z) protein complex is distinct from other polycomb group complexes and contains covalently modified ESC//Mol. Cell Biol. Vol. 20. P. 3069-3078.
- Orlando V., 2003. Polycomb, epigenomes and control of cell identity//Cell. Vol. 112. P. 599-606.
- Paro R., Harte P.J., 1996. The role of Polycomb group and trithorax group chromatin complexes in the maintenance of determined cell states//Epigenetic Mechanisms of Gene Regulation. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.-Y. P. 507-528.
- Paro R., Hogness D.S., 1991. The Polycomb protein shares a homologous domain with a heterochromatin-associated protein of Drosophila//Proc. Natl. Acad. Sci. USA. Vol. 88. P. 263-267.
- Petrino T.R., Lin Y.-W.P., Packed G.R. et al., 2001. Cloning and Sequencing of Zebrafish (Danio rerio) Polycomb Gene. Unpublished.
- Pirrotta V., 1995. Chromatin complexes regulating gene expression in Drosophila//Curr. Opin. Genet. Dev. Vol. 5. P. 466-472.
- Pirrotta V., 1998. Polycombing the genome: PcG, trxG, and chromatin silencing//Cell. Vol. 93. P. 333-336.
- Rastelli L., Chan C.S., Pirrotta V., 1993. Related chromosome binding sites for zeste, suppressors of zeste and Polycomb group proteins in Drosophila and their dependence on Enhancer of zeste function//EmboJ.Vol. 12. P. 1513-1522.
- Ringrose L., Paro R., 2004. Epigenetic regulation of cellular memory by the Polycomb and Trithorax group proteins//Annu. Rev. Genet. Vol. 38. P. 413-443.
- Ringrose L., Paro R., 2007. Polycomb/Trithorax response elements and epigenetic memory of cell identity//Development. Vol. 134. P. 223-232.
- Ringrose L., Rehmsmeier M., Dura J.M., Paro R., 2003. Genome-wide prediction of Polycomb/Trithorax response elements in Drosophila melanogaster//Dev. Cell. Vol. 5. P. 759-771.
- Roger A.J., Hug L.A., 2006. The origin and diversification of eukaryotes: problems with molecular phyogenetics and molecular clock estimation//Philos. Trans. R. Soc. Lond. B. Biol. Sci. Vol. 361. P. 1039-1054.
- Rybakina E., 2006. Nuclear positioning and functional regulation of endogenous genes and transgenes in the fruit fly Drosophila melanogaster and in mammalian cells//Fakultat fur Biologie LMU Munchen, Munchen. 176 p.
- Saleh A., Al-Abdallat A., Ndamukong I. et al., 2007. The Arabidopsis homologs of trithorax (ATX1) and enhancer of zeste (CLF) establish 'bivalent chromatin marks' at the silent AGAMOUS locus//Nucleic Acids Res. Vol. 35. P. 6290-6296.
- Satijn D.P., Hamer К.M., den Blaauwen J., Otte A.P., 2001. The polycomb group protein EED interacts with YY1, and both proteins induce neural tissue in Xenopus embryos//Mol. Cell Biol. Vol. 21. P. 1360-1369.
- Saurin A.J., Shao Z., Erdjument-Bromage H. et al., 2001. A Drosophila Polycomb group complex includes Zeste and dTAFII proteins//Nature. Vol. 412. P. 655-660.
- Schubert D., Clarenz O., Goodrich J., 2005. Epigenetic control of plant development by Polycomb-group proteins//Curr Opin Plant Biol. Vol. 8. P. 553-561.
- Schwartz Y.В., Pirrotta V., 2007. Polycomb silencing mechanisms and the management of genomic programmes//Nat Rev Genet. Vol. 8. P. 9-22.
- Sengupta A.K., Kuhrs A., Muller J., 2004. General transcriptional silencing by a Polycomb response element in Drosophila//Development. Vol. 131. P. 1959-1965.
- Shao Z., Raible F., Mollaaghababa R. et al., 1999.Stabilization of chromatin structure by PRC1, a Polycomb complex//Cell. Vol. 98. P. 37-46.
- Shimono Y., Murakami H., Hasegawa Y., Takahashi M., 2000.RET finger protein is a transcriptional repressor and interacts with enhancer of polycomb that has dual transcriptional functions//J. Biol. Chem. Vol. 275. P. 39411-39419.
- Simon J.A., Tamkun J.W., 2002. Programming off and on states in chromatin: mechanisms of Polycomb and trithorax group complexes//Curr Opin Genet Dev. Vol. 12. P. 210-218.
- Stankunas K., Berger J., Ruse С. et al., 1998. The enhancer of polycomb gene of Drosophila encodes a chromatin protein conserved in yeast and mammals//Development. Vol. 125. P. 4055-4066.
- Strouboulis J., Damjanovski S., Vermaak D. et al., 1999. Transcriptional repression by XPcl, a new Polycomb homolog in Xenopus laevis embryos, is independent of histone deacetylase//Mol. Cell Biol. Vol. 19. P. 3958-3968.
- Sun Y.A.Z., 2005. A unified mode of epigenetic gene silencing//RNA Biology. Vol. 2. P. e8-e 10.
- Thakur J.K., Malik M.R., Bhatt V. et al., 2003. A POLYCOMB group gene of rice (Oryza sativa L. subspecies indica), OsiEZl, codes for a nuclear-localized protein expressed preferentially in young seedlings and during reproductive development//Gene. Vol. 314. P. 1-13.
- Tie F., Furuyama Т., Prasad-Sinha J. et al., 2001.The Drosophila Polycomb Group proteins ESC and E(Z) are present in a complex containing the histone-binding protein p55 and the histone deacetylase RPD3//Development. Vol. 128. P. 275-286.
- Vazquez J., Muller M., Pirrotta V., Sedat J.W., 2006. The Мер element mediates stable long-range chromosome-chromosome interactions in Drosophila//Mol. Biol. Cell. Vol. 17. P. 2158-2165.
- Wakimoto В.Т., 1998. Beyond the nucleosome: epigenetic aspects of position-effect variegation in Drosophila//Cell. Vol. 93. P. 321-324.
- Wang D., Tyson M.D., Jackson S.S., Yadegari R., 2006. Partially redundant functions of two SET-domain polycomb-group proteins in controlling initiation of seed development in 73. 73. Arabidopsis//Proc. Natl. Acad. Sci. USA. Vol. 103. P. 13244-13249.
- Wang L., Brown J.L., Cao R. et al., 2004. Hierarchical recruitment of polycomb group silencing complexes//Mol. Cell. Vol. 14. P. 637-646.
- Whitcomb S.J., Basu A., Allis С.D., Bernstein E., 2007. Polycomb Group proteins: an evolutionary perspective//Trends Genet. Vol. 23. P. 494-502.
- Yang Y., Sun Y., Luo X. et al., 2007. Polycomb-like genes are necessary for specification of dopaminergic and serotonergic neurons in Caenorhabditis elegans//Proc. Natl. Acad. Sci. USA. Vol. 104. P. 852-857.
- link В., Раro R., 1989. In vivo binding pattern of a trans-regulator of homoeotic genes in Drosophila melanogaster//Nature. Vol. 337. P. 468-471.
Дополнительные файлы
![](/img/style/loading.gif)