The last system by Cavalier-Smith

Cover Page


Cite item

Full Text

Abstract

At the end of 2022, after the death of T. Cavalier-Smith, his fundamental synthesis under the title “Ciliary transition zone evolution and the root of the eukaryote tree: implications for opisthokont origin and classification of kingdoms Protozoa, Plantae, and Fungi” was published on the “Protoplasma” pages. This work highlights the organization of the transition zone of the eukaryotic flagellum and provides a new author’s system for this domain. Since the analysis of this heuristically important paper was not included in any memorial essay dedicated to Cavalier-Smith published in 2021–2022, this writing is dedicated to attempt of such an analysis. In addition, a glossary is provided containing specific terms introduced by Cavalier-Smith, which will help to better navigate the theoretical heritage of this scientist.

About the authors

Ivan V. Zmitrovich

Komarov Botanical Institute of the Russian Academy of Sciences

Email: iv_zmitrovich@mail.ru
ORCID iD: 0000-0002-3927-2527
SPIN-code: 4155-3190
Scopus Author ID: 56521442400
ResearcherId: I-1523-2013
https://binran.ru/sotrudniki/4926/

D.Sc. in Biology, Leading Researcher, Laboratory of Systematics and Geography of the Fungi

Russian Federation, St. Petersburg

Vladimir V. Perelygin

Saint Petersburg State Chemical and Pharmaceutical University

Email: vladimir.pereligin@pharminnotech.com
ORCID iD: 0000-0002-0999-5644
SPIN-code: 3128-7451
Scopus Author ID: 13105602000
ResearcherId: AAV-6556-2020

Dr. Med. Sci., Professor, Head of the Industrial Ecology Department

Russian Federation, Saint Petersburg

Mikhail Zharikov

Saint Petersburg State Chemical and Pharmaceutical University

Author for correspondence.
Email: zharikov.mihail@pharminnotech.com
ORCID iD: 0000-0003-0720-501X
SPIN-code: 7818-7228
ResearcherId: AAS-9156-2021

магистр

Russian Federation, Санкт-Петербург

References

  1. Zmitrovich I.V., Perelygin V.V., Zharikov M.V. To the 80th anniversary of Professor Thomas Cavalier-Smith. Pharmacy Formulas. 2022. М. 4(4). P. 86–96. https://doi.org/10.17816/phf321799. (In. Russ).
  2. Cavalier-Smith T. Ciliary transition zone evolution and the root of the eukaryote tree: implications for opisthokont origin and classification of kingdoms Protozoa, Plantae, and Fungi // Protoplasma. 2022. V. 259. P. 487–593. https://doi.org/10.1007/s00709-021-01665-7
  3. Cavalier-Smith T. Kingdom Chromista and its eight phyla: a new synthesis emphasising periplastid protein targeting, cytoskeletal and periplastid evolution, and ancient divergences // Protoplasma. 2018. V. 255. P. 297–357. https://doi.org/10.1007/s00709-017-1147-3
  4. Cavalier-Smith T., Chao E.E., Lewis R. Multigene phylogeny and cell evolution of chromist infrakingdom Rhizaria: contrasting cell organization of sister phyla Cercozoa and Retaria // Protoplasma. 2018. V. 255. P. 1517–1574. https://doi.org/10.1007/s00709-018-1241-1
  5. Cavalier-Smith T., Chao E. Multidomain ribosomal protein trees and the planctobacterial origin of neomura (eukaryotes, archaebacteria) // Protoplasma. 2020. V. 257 (3). P. 621–753. https://doi.org/10.1007/s00709-019-01442-7
  6. Derelle R., Torruella G., Klimeš V., Eliáš M. Bacterial proteins pinpoint a single eukaryotic root // PNAS. 2015. V. 112 (7). P. E693–E699. https://doi.org/10.1073/pnas.1420657112
  7. Gawryluk R.M.R., Tikhonenkov D.V., Hehenberger E., Husnik F., Mylnikov A.P., Keeling P.J. Non-photosynthetic predators are sister to red algae // Nature. 2019. V. 572. P. 240–243. https://doi.org/10.1038/s41586-019-1398-6
  8. Cavalier-Smith T. A revised six-kingdom system of life // Biol. Rev. 1998. V. 73. P. 203–266.
  9. Cavalier-Smith T. Only six kingdoms of life // Proc. Biol. Sci. 2004. V. 271 (1545). P. 1251–1262. https://doi.org/10.1098/rspb.2004. 2705
  10. Cavalier-Smith T. Higher classification and phylogeny of Euglenozoa // Eur. J. Protistol. 2016. V. 56. P. 250–276. https://doi.org/10.1016/j.ejop.2016.09.003
  11. Cavalier-Smith T., Chao E.E., Lewis R. Multiple origins of Heliozoa from flagellate ancestors: New cryptist subphylum Corbihelia, superclass Corbistoma, and monophyly of Haptista, Cryptista, Hacrobia and Chromista // Molec. Phylog. Evol. 2015. 93: 331–362. https://doi.org/10.1016/j.ympev.2015.07.004
  12. Karpov S.A., Cvetkova V.S., Annenkova N.V., Vishnyakov A.E. Kinetid structure of Aphelidium and Paraphelidium (Aphelida) suggests the features of the common ancestor of Fungi and Opisthosporidia // J. Eukaryot. Microbiol. 2019. V. 66. P. 911–924. https://doi.org/10.1111/jeu.12742
  13. Zmitrovich I.V., Perelygin V.V., Zharikov M.V. Nomenclature and rank correlation of higher taxa of eukaryotes: monograph. Moscow: INFRA-M, 2022. 183 p. (Folia Cryptogamica Petropolitana, № 8)
  14. Cavalier-Smith T. Cell diversification in heterotrophic flagellates. In: D.J. Patterson, J. Larsen (eds). The Biology of free-living heterotrophic flagellates. Oxford University Press, 1991, pp. 113–131.
  15. Cavalier-Smith T., Chao E.E., Stechmann A., Oates B., Nikolaev S. Planomonadida ord. nov. (Apusozoa): ultrastructural affinity with Micronuclearia podoventralis and deep divergences within Planomonas gen. nov. // Protist. 2008. V. 159 (4): 535–562. https://doi.org/10.1016/j.protis.2008.06.002
  16. Cavalier-Smith T. Eukaryotes with no mitochondria // Nature. 1987. V. 326 (6111). P. 332–333. https://doi.org/10.1038/326332a0
  17. Cavalier-Smith T. Amoeboflagellates and mitochondrial cristae in eukaryote evolution: megasystematics of the new protozoan subkingdoms Eozoa and Neozoa // Archiv für Protistenkunde 1997. V. 147(3–4). P. 237–258. https://doi.org/10.1016/S0003-9365(97)80051-6
  18. Cavalier-Smith T. Megaphylogeny, cell body plans, adaptive zones: causes and timing of eukaryote basal radiations // J. Eukaryot. Microbiol. 2009. V. 56 (1). P. 26–33. https://doi.org/10.1111/j.1550-7408.2008.00373.x
  19. Cavalier-Smith T. Eukaryote kingdoms: seven or nine? // Biosystems. 1981. V. 14(3–4). P. 461–481. https://doi.org/10.1016/0303-2647(81)90050-2
  20. Cavalier-Smith T., Chao, Ema E.-Y., Oates B. Molecular phylogeny of Amoebozoa and the evolutionary significance of the unikont Phalansterium // European Journal of Protistology. 2004. V. 40. P. 21–48. https://doi.org/10.1016/j.ejop.2003.10.001
  21. Cavalier-Smith T. The phagotrophic origin of eukaryotes and phylogenetic classification of Protozoa // International Journal of Systematic and Evolutionary Microbiology. 2002. V. 52(Pt 2). P. 297–354. https://doi.org/10.1099/00207713-52-2-297
  22. Cavalier-Smith T. The kingdom Chromista. In: The chromophyte algae: problems and perspectives. Clarendon Press, Oxford, 1989, pp. 379–405.
  23. Cavalier-Smith T. The excavate protozoan phyla Metamonada Grassé emend. (Anaeromonadea, Parabasalia, Carpediemonas, Eopharyngia) and Loukozoa emend. (Jakobea, Malawimonas): their evolutionary affinities and new higher taxa // Int. J. Syst. Evol. Microbiol. 2003. V. 53 (Pt 6). P. 1741–1758. https://doi.org/10.1099/ijs.0.02548-0
  24. Cavalier-Smith T. Early evolution of eukaryote feeding modes, cell structural diversity, and classification of the protozoan phyla Loukozoa, Sulcozoa, and Choanozoa // European Journal of Protistology. 2013. V. 49 (2). P. 115–178. https://doi.org/10.1016/j.ejop.2012.06.001
  25. Cavalier-Smith T., Chao E.E., Lewis R. Multiple origins of Heliozoa from flagellate ancestors: New cryptist subphylum Corbihelia, superclass Corbistoma, and monophyly of Haptista, Cryptista, Hacrobia and Chromista // Molecular Phylogenetics and Evolution. 2015. V. 93. P. 331–362. https://doi.org/10.1016/j.ympev.2015.07.004
  26. Cavalier-Smith T. Kingdoms Protozoa and Chromista and the eozoan root of the eukaryotic tree // Biol Lett. 2010. V. 6(3). P. 342–345 https://doi.org/10.1098/rsbl.2009.0948
  27. Cavalier-Smith T. Kingdom Protozoa and its 18 phyla // Microbiol. Rev. 1993. V. 57. P. 953—994. 10.1128/mr.57.4.953-994.199
  28. Cavalier-Smith T. The kingdom Chromista: origin and systematic. In: F.E. Round, D.J. Chapman (eds). Progress in Phycological Research. V. 4. Bristol, 1986, pp. 309–347.
  29. Cavalier-Smith T., Chao E., Snell E.A., Berney Cédric, Fiore-Donno A.M., Lewis R. Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opisthokonts (animals, fungi, choanozoans) and Amoebozoa // Molecular Phylogenetics and Evolution. 2014. V. 81. P. 71–85. https://doi.org/10.1016/j.ympev.2014.08.012
  30. Jewari C.A.I., Baldauf S.L. An excavate root for the eukaryote tree of life // Sci. Adv. 2023. V. 9, eade4973. https://doi.org/10.1126/sciadv.ade4973
  31. Yazaki E., Yabuki A., Imaizumi A. et al. The closest lineage of the Archaeplastida is revealed by phylogenomics analyses that include Microheliella maris // Open Biology. 2022. V. 12. P. 210376. https://doi.org/10.1098/rsob.210376

Supplementary files

Supplementary Files
Action
1. JATS XML
Download

Copyright (c) 2024 Eco-Vector

Creative Commons License
This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
СМИ зарегистрировано Федеральной службой по надзору в сфере связи, информационных технологий и массовых коммуникаций (Роскомнадзор).
Регистрационный номер и дата принятия решения о регистрации СМИ: серия ПИ № ФС 77 - 76969 от 11.10.2019. 


This website uses cookies

You consent to our cookies if you continue to use our website.

About Cookies