Human Microbiome: Sequencing Data from Open Sources and Their Using in Independent Research
- Authors: Nikitin M.S1,2, Zakharevich N.V1, Kovtun A.S1, Artamonova I.I1,3
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Affiliations:
- Vavilov Institute of General Genetics, RAS
- Moscow Institute of Physics and Technologies
- Kharkevich Institute for Information Transmission Problems, RAS
- Issue: No 11 (2020)
- Pages: 15-21
- Section: Articles
- URL: https://journals.eco-vector.com/0032-874X/article/view/631085
- DOI: https://doi.org/10.7868/S0032874X20110022
- ID: 631085
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Abstract
It is well-known that microorganisms inhabiting the human body affect the host’s health, so it is extremely important and promising to study them. Modern sequencing methods allow us to study the microbiome directly, without cultivation. Nevertheless, is it necessary to look immediately for funds for the whole-genome sequence of microbiome samples when you are interesting in comparative characterization of the microbiome of sick and healthy people or predicting the response to a significant change in diet and the use of oral therapy? Open sources already offer access to a vast array of microbiome sequencing data obtained during the past decade. However, are these data valid for independent study of the practical characteristics of the microbiome?
Keywords
About the authors
M. S Nikitin
Vavilov Institute of General Genetics, RAS; Moscow Institute of Physics and Technologies
Email: mikhail.nikitin@phystech.edu
Moscow, Russia; Dolgoprudny, Moscow Oblast, Russia
N. V Zakharevich
Vavilov Institute of General Genetics, RAS
Email: zakharevich@yandex.ru
Moscow, Russia
A. S Kovtun
Vavilov Institute of General Genetics, RAS
Email: kovtunas25@gmail.com
Moscow, Russia
I. I Artamonova
Vavilov Institute of General Genetics, RAS; Kharkevich Institute for Information Transmission Problems, RAS
Email: irenart@gmail.com
Moscow, Russia; Moscow, Russia
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