GENETIC TYPING OF BRUCELLA MELITENSIS STRAINS ON THE BASIS OF VARIABILITY ANALYSIS OF INDEL LOCI
- Authors: KOVALEV D.A.1, KUZNETSOVA I.V.1, ZHIROV A.M.1, SERDUK N.S.1, ZHILCHENKO E.B.1, PONOMARENKO D.G.1, VODOPYANOV A.S.2, VODOPYANOV S.O.2, KULICHENKO A.N.1
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Affiliations:
- Stavropol Antiplague Institute, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
- Rostov-on-Don Antiplague Institute, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
- Issue: Vol 12, No 1 (2022)
- Pages: 81-86
- Section: Articles
- URL: https://journals.eco-vector.com/2226-6976/article/view/287886
- DOI: https://doi.org/10.18565/epidem.2022.12.1.81-6
- ID: 287886
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About the authors
Dmitry A. KOVALEV
Stavropol Antiplague Institute, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: kovalev_da.stv@list.ru
Cand. Med. Sci., Head, Laboratory of Biochemistry Stavropol, Russia
Irina V. KUZNETSOVA
Stavropol Antiplague Institute, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: stavnipchi@mail.ru
Bacteriologist, Laboratory of Biochemistry Stavropol, Russia
Andrew M. ZHIROV
Stavropol Antiplague Institute, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: stavnipchi@mail.ru
Researcher, Laboratory of Biochemistry, Antiplague Institute Stavropol, Russia
Natalia S. SERDUK
Stavropol Antiplague Institute, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: stavnipchi@mail.ru
Cand. Biol. Sci., Biologist, Laboratory of Collection of Pathogenic Microorganisms Stavropol, Russia
Elena B. ZHILCHENKO
Stavropol Antiplague Institute, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: stavnipchi@mail.ru
Cand. Biol. Sci., Head, Laboratory of Collection of Pathogenic Microorganisms Stavropol, Russia
Dmitry G. PONOMARENKO
Stavropol Antiplague Institute, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: stavnipchi@mail.ru
Cand. Biol. Sci., Head, Laboratory of Brucellosis Stavropol, Russia
Alexey S. VODOPYANOV
Rostov-on-Don Antiplague Institute, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: alexvod@gmail.com
Cand. Med. Sci., Head, Group of Virology Rostov-on-Don, Russia
Sergey O. VODOPYANOV
Rostov-on-Don Antiplague Institute, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: serge100v@gmail.com
MD, Head, Laboratory of Microbial Biochemistry Rostov-on-Don, Russia
Aleksandr N. KULICHENKO
Stavropol Antiplague Institute, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: stavnipchi@mail.ru
Professor, MD, Corresponding Member of the Russian Academy of Sciences; Director Stavropol, Russia
References
- Orzil L., Preis I.S., Almeida I.G., Souza P.G., Soares Filho P.M., Jacinto F.B. et al. Validation of the multiplex PCR for identification of Brucella spp. Ciência Rural. 2016; 46(5): 847-52. doi: https://doi.org/10.1590/0103-8478cr20150065
- Малышев Д.В., Баннов В.А., Черных О.Ю., Василевич Ф.И., Котельникова А.А., Донник И.М. и др. Правообладатель ФГБОУ ВО «Кубанский государственный аграрный университет имени И.Т. Трубилина». Способ выявления генома возбудителя бруцеллезной инфекции (Brucella spp.) у сельскохозяйственных животных. Патент РФ № 2703400, 2019.
- Sankarasubramanian J., Vishnu U.S., Gunasekaran P., Rajendhran J. A genome-wide SNP-based phylogenetic analysis distinguishes different biovars of Brucella suis. Infect. Genet. Evol. 2016; 41: 213-7. doi: https://doi.org/10.1016/j.meegid.2016.04.012
- Vergnaud G., Hauck Y., Christiany D., Daoud B., Pourcel C., Jacques I. et al. Genotypic Expansion Within the Population Structure of Classical Brucella Species Revealed by MLVA16 Typing of 1404 Brucella Isolates From Different Animal and Geographic Origins, 1974-2006. Front Microbiol. 2018; 9 (8): 1253-62. doi: https://doi.org/10.3389/fmicb.2018.01545
- Lee H., Nguyen M.P., Choi Y., Kim Y.-H. Minimum InDel pattern analysis of the Zika virus. BMC Genomics 2018; 19(1): 535. doi: https://doi.org/10.1186/s12864-018-4935-z
- R Core Team (2020). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. https://www.R-project.org/
- Wickham H., Averick M., Bryan J., Chang W., McGowan L., François R. et al. Welcome to the Tidyverse. J. Open. Source Softw. 2019; 4(43): 1686. doi: https://doi.org/10.21105/joss.01686
- R package version 1.0.12. https://CRAN.R-project.org/package=pheatmap
- Pisarenko S.V., Kovalev D.A, Volynkina A.S., Ponomarenko D.G., Rusanova D.V., Zharinova N.V. et al. Global evolution and phylogeography of Brucella melitensis strains. BMC Genomics 2018; 19(1): 353. doi: https://doi.org/10.1186/s12864-018-4762-2
- Liu Z., Wang C., Wei K., Zhao Z., Wang M., Li D. et al. Investigation of Genetic Relatedness of Brucella Strains in Countries Along the Silk Road. Frontiers in veterinary science 2021; 7: 539444. https://doi.org/10.3389/fvets.2020.539444
- Ковалев Д.А., Кузнецова И.В., Сирица Ю.В., Ульшина Д.В., Шапаков Н.А., Бобрышева О.В. и др. авторы. Правообладатель ФКУЗ Ставропольский противочумный институт Роспотребнадзора. Способ генетического INDEL-типирования штаммов Brucella melitensis. Патент РФ № 2732425, 2020.