The phylogenomic analysis of Salmonella enterica enterica serovar Enteritidis isolates associated with sporadic and group morbidity in Russia
- Autores: Kuleshov K.V.1, Pavlova A.S.1, Egorova A.E.1, Guseva A.N.1, Krutova N.E.1, Akulova N.K.1, Bikmetova K.R.1, Parkina N.V.1, Mikhaylova Y.V.1, Veselova O.A.1, Podkolzin A.T.1, Akimkin V.G.1
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Afiliações:
- Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
- Edição: Volume 13, Nº 2 (2023)
- Páginas: 76-82
- Seção: Articles
- URL: https://journals.eco-vector.com/2226-6976/article/view/554167
- DOI: https://doi.org/10.18565/epidem.2023.13.2.76–82
- ID: 554167
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Resumo
Objective. To assess the genetic diversity of Salmonella enterica subsp. enterica serovar Enteritidis isolates circulating in Russia, which were obtained in cases of group and sporadic morbidity, using genome-wide sequencing data.
Subjects and methods. Genome-wide sequencing and a phylogenetic analysis of 460 S. Enteritidis isolates obtained during the work of the Reference Center for Monitoring Salmonellosis were carried out.
Results. The findings made it possible to describe the population structure of Russian S. Enteritidis isolates and to understand their phylogenetic position in the context of global pathogen diversity, to assess the concordance of epidemiological data with genetic clustering data and to show the spatial and temporal features of clustering the isolates belonging to epidemiologically unrelated cases of group morbidity.
Conclusion. The results of the study create prerequisites for the formation of a unified national laboratory and information system for monitoring S. Enteritidis and investigating the epidemic foci of group morbidity with salmonellosis.
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Sobre autores
Konstantin Kuleshov
Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Autor responsável pela correspondência
Email: konstantinkul@gmail.com
ORCID ID: 0000-0002-5238-7900
Cand. Biol. Sci., Senior Researcher, Laboratory of Molecular Diagnostics and Epidemiology of Intestinal Infections
Rússia, MoscowAnastasia Pavlova
Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: nasty-pavlov@yandex.ru
ORCID ID: 0000-0003-4619-9337
Junior Researcher, Laboratory of Molecular Diagnostics and Epidemiology of Intestinal Infections
Rússia, MoscowAnna Egorova
Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: bioanna1995@gmail.com
ORCID ID: 0000-0003-0486-1353
Researcher, Laboratory for the Molecular Mechanisms of Antibiotic Resistance
Rússia, MoscowAnna Guseva
Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: anguseva@cmd.su
ORCID ID: 0000-0001-7028-0253
Junior Researcher, Laboratory of Molecular Diagnostics and Epidemiology of Intestinal Infections
Rússia, MoscowNatalia Krutova
Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: nkrutova@cmd.su
ORCID ID: 0000-0003-2925-5376
Junior Researcher, Laboratory of Molecular Diagnostics and Epidemiology of Intestinal Infections
Rússia, MoscowNadezhda Akulova
Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: akulova.n@gmail.com
ORCID ID: 0000-0003-0208-7165
Senior Researcher, Laboratory of Molecular Diagnostics and Epidemiology of Intestinal Infections
Rússia, MoscowKristina Bikmetova
Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: c.bicmetowa@yandex.ru
ORCID ID: 0000-0003-3368-7833
Junior Researcher, Laboratory of Molecular Diagnostics and Epidemiology of Intestinal Infections
Rússia, MoscowNatalia Parkina
Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: parkina@cmd.su
ORCID ID: 0000-0003-3948-1385
Researcher, Laboratory of Molecular Diagnostics and Epidemiology of Intestinal Infections
Rússia, MoscowYulia Mikhaylova
Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: mihailova@cmd.su
ORCID ID: 0000-0002-5646-538X
Head of Laboratory of Molecular Mechanisms of Antibiotic Resistance
Rússia, MoscowOlga Veselova
Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: sapienscri@gmail.com
ORCID ID: 0000-0002-5041-4370
Researcher, Laboratory of Molecular Diagnostics and Epidemiology of Intestinal Infections
Rússia, MoscowAlexandr Podkolzin
Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: apodkolzin@pcr.ru
ORCID ID: 0000-0002-0044-3341
MD, Deputy Director in Epidemiology
Rússia, MoscowVasiliy Akimkin
Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: vgakimkin@yandex.ru
ORCID ID: 0000-0003-4228-9044
Academician of the Russian Academy of Sciences; MD, Professor, Director
Rússia, MoscowBibliografia
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