The phylogenomic analysis of Salmonella enterica enterica serovar Enteritidis isolates associated with sporadic and group morbidity in Russia
- Авторлар: Kuleshov K.V.1, Pavlova A.S.1, Egorova A.E.1, Guseva A.N.1, Krutova N.E.1, Akulova N.K.1, Bikmetova K.R.1, Parkina N.V.1, Mikhaylova Y.V.1, Veselova O.A.1, Podkolzin A.T.1, Akimkin V.G.1
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Мекемелер:
- Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
- Шығарылым: Том 13, № 2 (2023)
- Беттер: 76-82
- Бөлім: Articles
- URL: https://journals.eco-vector.com/2226-6976/article/view/554167
- DOI: https://doi.org/10.18565/epidem.2023.13.2.76–82
- ID: 554167
Дәйексөз келтіру
Ашық рұқсат
Рұқсат берілді
Аннотация
Objective. To assess the genetic diversity of Salmonella enterica subsp. enterica serovar Enteritidis isolates circulating in Russia, which were obtained in cases of group and sporadic morbidity, using genome-wide sequencing data.
Subjects and methods. Genome-wide sequencing and a phylogenetic analysis of 460 S. Enteritidis isolates obtained during the work of the Reference Center for Monitoring Salmonellosis were carried out.
Results. The findings made it possible to describe the population structure of Russian S. Enteritidis isolates and to understand their phylogenetic position in the context of global pathogen diversity, to assess the concordance of epidemiological data with genetic clustering data and to show the spatial and temporal features of clustering the isolates belonging to epidemiologically unrelated cases of group morbidity.
Conclusion. The results of the study create prerequisites for the formation of a unified national laboratory and information system for monitoring S. Enteritidis and investigating the epidemic foci of group morbidity with salmonellosis.
Негізгі сөздер
Толық мәтін
Авторлар туралы
Konstantin Kuleshov
Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Хат алмасуға жауапты Автор.
Email: konstantinkul@gmail.com
ORCID iD: 0000-0002-5238-7900
Cand. Biol. Sci., Senior Researcher, Laboratory of Molecular Diagnostics and Epidemiology of Intestinal Infections
Ресей, MoscowAnastasia Pavlova
Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: nasty-pavlov@yandex.ru
ORCID iD: 0000-0003-4619-9337
Junior Researcher, Laboratory of Molecular Diagnostics and Epidemiology of Intestinal Infections
Ресей, MoscowAnna Egorova
Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: bioanna1995@gmail.com
ORCID iD: 0000-0003-0486-1353
Researcher, Laboratory for the Molecular Mechanisms of Antibiotic Resistance
Ресей, MoscowAnna Guseva
Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: anguseva@cmd.su
ORCID iD: 0000-0001-7028-0253
Junior Researcher, Laboratory of Molecular Diagnostics and Epidemiology of Intestinal Infections
Ресей, MoscowNatalia Krutova
Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: nkrutova@cmd.su
ORCID iD: 0000-0003-2925-5376
Junior Researcher, Laboratory of Molecular Diagnostics and Epidemiology of Intestinal Infections
Ресей, MoscowNadezhda Akulova
Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: akulova.n@gmail.com
ORCID iD: 0000-0003-0208-7165
Senior Researcher, Laboratory of Molecular Diagnostics and Epidemiology of Intestinal Infections
Ресей, MoscowKristina Bikmetova
Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: c.bicmetowa@yandex.ru
ORCID iD: 0000-0003-3368-7833
Junior Researcher, Laboratory of Molecular Diagnostics and Epidemiology of Intestinal Infections
Ресей, MoscowNatalia Parkina
Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: parkina@cmd.su
ORCID iD: 0000-0003-3948-1385
Researcher, Laboratory of Molecular Diagnostics and Epidemiology of Intestinal Infections
Ресей, MoscowYulia Mikhaylova
Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: mihailova@cmd.su
ORCID iD: 0000-0002-5646-538X
Head of Laboratory of Molecular Mechanisms of Antibiotic Resistance
Ресей, MoscowOlga Veselova
Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: sapienscri@gmail.com
ORCID iD: 0000-0002-5041-4370
Researcher, Laboratory of Molecular Diagnostics and Epidemiology of Intestinal Infections
Ресей, MoscowAlexandr Podkolzin
Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: apodkolzin@pcr.ru
ORCID iD: 0000-0002-0044-3341
MD, Deputy Director in Epidemiology
Ресей, MoscowVasiliy Akimkin
Central Research Institute of Epidemiology, Russian Federal Service for Supervision of Consumer Rights Protection and Human Well-Being
Email: vgakimkin@yandex.ru
ORCID iD: 0000-0003-4228-9044
Academician of the Russian Academy of Sciences; MD, Professor, Director
Ресей, MoscowӘдебиет тізімі
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