Bayesian meta-analysis of the binary outcomes of randomized clinical trials

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Abstract

The study presented the main aspects of conducting Bayesian network meta-analysis as a method of indirect comparisons using mathematical models. To describe the performance of the Bayesian network meta-analysis, codes for the random-effects and fixed-effects models were included. The models were written in Component Pascal and run in the JAGS program. To allow cross-reference of results, data used for modeling purposes were generated data from the article by D. Hu, A.M. O'Connor, S. Wang et al. [6]. The R language and rjags package were used to load data into the model and run the program. To determine the best model, model adequacy indicators were used, such as total residual deviation, and leverage and deviation information criterion were calculated using the original R code. A graphical method was also used to determine the adequacy of the models using the ggplot2 package. An example of constructing a network of evidence based on available results on the effectiveness of drugs from clinical trials was considered, taking into account the assumptions of transitivity and heterogeneity. Indirect and direct comparisons to determine the true estimates of drugs were possible. The elements of Bayesian statistics, such as prior and posterior probabilities and likelihood, and the advantages of using them in meta-analysis were explained. The mathematical apparatus of the generalized linear model was presented in both general and specific forms, using binomial output data to obtain relative estimates of the effects of therapies. An explanation of how the models work is presented. The random-effects model showed superiority over the fixed-effects model in the comparison of adequacy metrics. To achieve better adequacy, data must be carefully downloaded from publications, and informative priors selected. In general, Bayesian synthesis is a distinct and important type of network meta-analysis. It is unique because it uses a probabilistic approach to data analysis. Understanding the basic principles of Bayesian statistics is also an important aspect of the successful use of this method in various research fields. However, for effective application of this method, attention must be paid to careful data preparation and the choice of priors. With informative prior distributions and proper implementation, Bayesian synthesis can produce more accurate and reliable results than other meta-analysis methods. Bayesian synthesis is a method of statistical data analysis recognized worldwide and in the Russian Federation..

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About the authors

Kirill V. Sapozhnikov

Kirov Military Medical Academy

Author for correspondence.
Email: vmeda-nio@mil.ru
ORCID iD: 0000-0002-2476-7666
SPIN-code: 2707-0339
Scopus Author ID: 57200810332
ResearcherId: ААЕ-3453-2022

MD, Cand. Sci. (Med.)

Russian Federation, Saint Petersburg

Sergei A. Parfenov

Kirov Military Medical Academy

Email: sa.parfenov1988@yandex.ru
ORCID iD: 0000-0002-1649-9796
SPIN-code: 6939-6910

MD, Cand. Sci. (Med.)

Russian Federation, Saint Petersburg

Andrei A. Lazarev

Saint Petersburg State University of Telecommunications

Email: Andrey.05.03.ru@mail.ru
ORCID iD: 0009-0006-6204-8423
SPIN-code: 9715-2124

graduate student

Russian Federation, Saint Petersburg

Ruslan V. Kirichek

Saint Petersburg State University of Telecommunications

Email: kirichek@sut.ru
ORCID iD: 0000-0002-8781-6840
SPIN-code: 3253-4972

Dr. Sci. (Tech.), associate professor

Russian Federation, Saint Petersburg

Daria G. Tolkacheva

Russian Presidential Academy of National Economy and Public Administration

Email: tolkacheva.d@gmail.com
ORCID iD: 0000-0002-6314-4218
SPIN-code: 4186-5243
Scopus Author ID: 57221817074

independent expert of research projects

Russian Federation, Moscow

Olga N. Mironenko

Russian Presidential Academy of National Economy and Public Administration

Email: freelomir@yandex.ru
ORCID iD: 0000-0001-8952-8386
SPIN-code: 3265-8708

Cand. Sci. (Econ.)

Russian Federation, Moscow

Natalia V. Klishkova

Kirov Military Medical Academy

Email: N-Klishkova@yandex.ru
ORCID iD: 0000-0003-0273-0931
SPIN-code: 7031-7397

Cand. Sci. (Ped.), associate professor

Russian Federation, Saint Petersburg

Valeriy V. Kulishenko

Kirov Military Medical Academy

Email: v_kulishenko@mail.ru
ORCID iD: 0000-0002-3872-3357
SPIN-code: 1899-7341

MD, Cand. Sci. (Med.)

Russian Federation, Saint Petersburg

References

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Supplementary files

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2. Fig. 1. A network of three evidences

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3. Fig. 2. Data contribution using a random-effects model

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4. Fig. 3. Data contribution using a fixed-effects model

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