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Vol 20, No 1 (2022)

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Articles

Transcriptome analysis in oncology and dermatology

Sergeeva E.Y., Fefelova Y.A., Bardezkaya Y.V.

Abstract

Personalized therapy allows to reveal subtypes of diseases with similar symptoms but various molecular mechanisms of development. Different -omics (genomics, epigenomics, transcriptomics, proteomics ets) are used to divide the diseases into subtypes. Transcriptomics is the investigation of whole RNA profile coding by the genome of single cell in specific time period or under specific circumstances. Transcriptome is all RNA transcripts produced by the genome in some time. The aim of the review is to summarize the modern data on perspective methods of investigation - microarray and next generation sequencing (NGS), to disclose the advantages and peculiarities of every method and the use in dermatology and oncology. Material and methods. The materials are the results of the investigations on the theme of russian and foreign researchers and ours published data over the past 13 years, from 2007 till 2020. The data was obtained from biomedical on-line databases PubMed, EMBASE, MedLine. Results. Modern data on microarray and next generation sequencing in the context of transcriptome investigations are summarized in the article. The choice of method is based on the peculiarities and tasks of the investigation. Recently transcriptome investigations are used in many medicine fields including oncology and dermatology that promotes the development of personalized therapy and precise prognosis of diseases. Conclusion. Transcriptome investigations allow to assess the alterations of gene expression profile after the influence of etiologic factors that extends the understanding of diseases pathogenesis and leads to the increased effectivity of therapy

Molekulyarnaya Meditsina (Molecular medicine). 2022;20(1):3-8
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Posttranslational phosphorylation and fragmentation of cardiac troponin T: mechanisms and significance

Chaulin A.M.

Abstract

Among a very significant number of possible variants of posttranslational modifications (PTM) affecting the contractile function of the myocardium, the most significant effect is exerted by posttranslational phosphorylation of protein components of the contractile apparatus. This type of PTM is carried out due to the action of kinase enzymes (phosphotransferases) that catalyze the transfer of a phosphate group to amino acid residues of proteins of the contractile apparatus. A change in the phosphorylation activity leads to a change in the function of the corresponding modified protein, which is accompanied by a change in the contractile function of the entire myocardium. At the same time, the phosphorylation activity of certain contractile proteins can change both in physiological conditions and in some cardiovascular diseases (CVD), including heart failure, acute myocardial infarction and cardiac arrhythmias. In addition, with these pathological conditions, the activity of proteolytic enzymes that cause fragmentation of protein molecules significantly changes. The purpose. To systematize information about the main mechanisms of posttranslational phosphorylation and fragmentation of the cardiac troponin T (cTnT) molecule and note their importance in the pathogenesis and diagnosis of CVD. Material and methods. Analysis of the main foreign and domestic sources on PubMed/Medline, Embase, RSCI/elibrary databases over the past 30 years. Results. According to the results of the review, a significant effect of the discussed PTMs on the pathophysiology and laboratory diagnosis of CVD was shown: 1) an increase in cTnT phosphorylation is mainly accompanied by a decrease in myocardial contractile function; the level of phosphorylated cTnT molecules in blood serum may reflect the status of intracellular phosphorylation, and, accordingly, be used for diagnostic and prognostic purposes; 2) fragmentation of the cTnT molecule into smaller fragments promotes earlier release from cardiomyocytes, and by identifying these fragments using immunoassays, early diagnosis of CVD can be improved; these small cTnTfragments can also pass through a hematosalivary and glomerular filter, allowing the use of saliva and oral fluid as a non-invasively obtained biological material, 3) the cleavage of the cTnT molecule by the enzyme thrombin in the myocardium of patients sufferingfrom cardiomyopathy can be considered as an additional pathophysiological mechanism that disrupts the contractile function of the myocardium.

Molekulyarnaya Meditsina (Molecular medicine). 2022;20(1):9-18
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Provocation of oxidative stress by heavy metals as a possible trigger factor in the development of rheumatoid arthritis

Takha E.A., Shuralev E.A., Renaudineau Y., Arleevskaya M.I.

Abstract

Introduction. Rheumatoid arthritis, like other multifactorial diseases, develops as a result of an inadequate response of a predisposed organism to environmental challenges. Material and methods. A review of the literature on the molecular mechanisms of the effects of heavy metals on the body. Results. It is known that ecotoxicants provoke various nonspecific processes in the body, including oxidative stress (OS). The latter, in turn, according to a fairly large number of studies, is represented in rheumatoid, and possibly plays a pathogenetic role in this disease. The aim of the review is to analyze the mechanisms of the possible role of heavy metals in the development of rheumatoid arthritis. The review presents an analysis of publications by Russian and foreign authors over the past 10 years. Since environmental factors are modifiable to a certain extent, the study of specific mechanisms of the triggering effect of these factors on individuals at risk is of great practical importance. Conclusion. The influence of the certain environmental factors, including heavy metals, as well as various combinations of these factors, on the development of rheumatoid arthritis in individuals at risk requires further study.

Molekulyarnaya Meditsina (Molecular medicine). 2022;20(1):19-24
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Mitochondria - intracellular targets of geroprotective effect of V007

Kvetnoy I.M., Mironova E.S., Krylova Y.S., Mylnikova A.A., Zubareva T.S., Leont’eva D.O., Polyakova V.O., Petrosyan M.A.

Abstract

Introduction. Oxidative stress and mitochondrial dysfunction are observed in virtually any disease associated with premature aging. Signaling molecules produced by mitochondria can act as specific targets for the action of pharmacological agents in order to regulate the processes of cellular aging, which opens up new possibilities for the search and development of drugs for effective pharmacotherapy of age-associated pathologies conditions. The aim of the study. To study the effect of V007 on the expression of mitochondrial biomarkers in rat liver cells in vivo to elucidate the possible mechanism of its geroprotective action. Methods. Molecular biological methods were used to study the expression of key mitochondrial proteins: Tom70, Tom20, VDAC, DRP1, prohibitin, Parkin, PINK1 in liver cells of young and old rats in normal conditions and with the use of the innovative drug V007. Results. The data obtained indicate that when using the V007preparation, there is a statistically significant increase in the expression of all studied mitochondrial proteins in hepatocytes of old rats to the level of young animals: DRP1 by 1.3 times; Parkin 1.2 times; PINK11.2 times; Prohibitin 1.4 times; Tom 201.3 times; Tom 701.2 times; VDAC 1.2 times. This change in the expression of mitochondrial proteins is due to the activation of their synthesis and increased activity of the mitochondrial transport systems. Conclusion. V007has a general regulatory and geroprotective effect, being a targeted pharmacological agent that regulates the functions of hepatocytes during aging by normalizing the expression of key mitochondrial proteins.

Molekulyarnaya Meditsina (Molecular medicine). 2022;20(1):25-30
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Sirtuins: predictive molecular diagnosis of Alzheimer’s disease in long-liver

Pukhalskaya A.E., Linkova N.S., Umnov R.S., Kozlov K.L., Kvetnoy I.M., Paltsev M.A.

Abstract

The incidence of Alzheimer’s disease (AD) in people older 80 years old is 52%. Consequently, the predictive diagnostic of this neurodegenerative disease in long-liver is the actual goal of molecular medicine and gerontology. The aim of the research is to compare saliva concentration of sirtuins of long-liver in early AD stage and people without neuropathology. Methods. All long-liver were divided into 2 groups: «norm» (90-94 years old, n=14) and AD patients (90-95years old, n=15). The «norm» group includes persons without neuropathology and other somatic diseases in the acute phase. Saliva concentration of Sirt1, Sirt3, Sirt5, Sirt6 was measured by enzyme immunoassay method. Results. Saliva concentration of Sirt1, Sirt3 and Sirt6 AD patients was in 2.0, 3.7 and 3.0 times lower in comparison with corresponding parameter in the group «norm». Saliva concentration of Sirt5 of long-liver with Alzheimer’s disease and without neuropathology had no significant difference. Conclusion. Saliva concentration of Sirt1, Sirt3, Sirt6 assessment in the saliva of long-liver can apply as one of the criteria of molecular early AD diagnostic.

Molekulyarnaya Meditsina (Molecular medicine). 2022;20(1):31-34
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Orcadian rhythm of melatonin receptor expression in the buccal epithelium of pregnant women and their newborn children: development of molecular markers for prognosis of delayed postnatal pathology

Evsyukova I.I., Polyakova V.O., Kleimenova T.S., Kvetnoy I.M., Paltzev M.A.

Abstract

Introduction. Buccal epithelium (BE), in which cells the expression of signal molecules reflecting the state of homeostasis of the body in normal and pathological conditions is verified, is used as a diagnostic material for a number of diseases in adults. The aim of the research was to study the circadian rhythm of melatonin receptor (MT) expression in the buccal epithelium ofpregnant women and their newborn children for the possible development of a non-invasive method for molecular prediction of delayed postnatal pathology. Methods. The MT in blood serum and receptors MT1 and MT2 in BE was studied in 13 pregnant women and their newborns on the 3rd day of life at 12.00pm and at 04.00 am. Results. The concentration of MT in the blood of healthy pregnant women (group 1) differed during the day and at night time (12.2±0.1 and 81.6±7.0 pg/ml, p<0,001, respectively). In patients with obesity and gestational diabetes (group 2), there were no circadian fluctuations in the level of MT (31.9±1.5 and 35.9±1.0 pg/ml, respectively, p>0.05). A similar pattern was also observed in newborns of both groups, but the concentration of MT in the blood was significantly lower than in mothers. The expression of MT receptors in the buccal epithelium in pregnant women of both groups had the same pattern of changes as the concentration of MT in the blood: the circadian rhythm ofMT1 and MT2 receptors expression in patients of the first group and its absence in the second group. The children of group 1 had circadian fluctuations in the expression ofMT1 and MT2, while they were absent in the second group. During the daytime in the first group, blood MT level correlated with the expression of MT2 ((R=0.5), and at night with MT1(R=0.78) and MT2 (R=0.4). In children of the second group, there were no correlation between the blood MT levels and the expression of receptors. Conclusion. The results obtained give reason to consider the use of this non-invasive method promising for predicting the risk of delayed postnatal pathology, the development of which may be associated with intrauterine disruption of the formation of the circadian rhythm of MT.

Molekulyarnaya Meditsina (Molecular medicine). 2022;20(1):35-39
pages 35-39 views

Lungs and liver remodeling depends on the presence of metastasis in melanoma B16-bearing mice

Palkina N.V., Zemtsov D.S., Narkevich A.N., Bardetskaya Y.V., Kirichenko A.K., Ruksha T.G.

Abstract

Pre-metastatic niche formation precedes tumor dissemination although the mechanisms of it remain unclear. Therefore, the aim of the study was to evaluate the expression of molecules characterizing the microenvironment remodeling in target organs lungs and liver, depending on the presence of metastases in murine melanoma B16 in vivo. Material and methods. Melanoma B16 cells transplantation was carried out on C57Bl6 mice followed by the tumor development observation within 15 days. After that the mice were sacrificed. Tumors, lungs and livers tissues were fixed in formalin and embedded in paraffin. Tissues samples were stained with hematoxylin and eosin. Immunohistochemical study was provided with monoclonal antibodies to vascular endothelial growth factor A, smooth muscle actin-a, CD45RD and СD-31. Results. Metastasis were revealed in 33.3% of mice. In mice presented melanoma metastases to visceral organs, an increase in the expression of vascular endothelial growth factor A was found in the lungs, and smooth muscle actin- and CD31 in the liver, compared with these molecules expression in the group of animals without metastases. Besides, a strong positive correlation between the level of nonproliferating Ki-67-negative melanoma cells in the primary tumor and CD45RO expression in the lungs and liver was observed in metastasis-free animals. Conclusions. The results obtained indicate possible presence of intercellular communication between melanoma cells in the primary tumor and target organs at the premetastatic stage resulting in altering of antitumor resistance.

Molekulyarnaya Meditsina (Molecular medicine). 2022;20(1):40-45
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Influence of κ- and λ-carrageenans from Chondrus armatus on colon cancer cells proliferation RKO and HCT-116

Tiasto V.A.

Abstract

Introduction. To this date the search for new substances with antitumor activity is an urgent task of pharmacology and medicine. Carrageenans are sulfated galactans of red algae, they are promising substances for the basis of future drugs, as well as for t he creation of preventive antitumor agents. In this work, we investigated the antitumor effect of carrageenans, different in structure and molecular weight, isolated from the algae Chondrus armatus on the cell lines by colon carcinomas and colorectal carcinoma. Aim of the study: comparative study of the antitumor effect of κ- and λ-carrageenans from the red alga Chondrus armatus and their oligosaccharides on tumor cell lines RKO and HCT-116. Material and methods. Carrageenans κ- and λ- and their oligosaccharide derivatives (κ- and λ-) were derived, characterized by structure (IR spectrometry) and molecular weight (Choromatography), and tested on RKO colon carcinoma and HCT-116 colorectal carcinoma cell lines. The antitumor effect was assessed using the MTT assay-cell proliferation assay and using fluorescent cell dyes of vivo Hoechst staining and propidium iodide to stain living and dead cells. Results and discussion. According to these data, carrageenans and their oligosaccharides exhibit a pronounced inhibitory effect on the proliferation of intestinal carcinoma tumor cells. Carrageenans κ- and λ- had a significant antitumor effect at a maximum concentration of 400 μg / ml during incubation for 24 and 48 hours in the investigated cell lines of intestinal carcinomas RKO and HCT-116. Conclusion. It was shown that oligosaccharides κ- and λ-carrageenans, isolated from the red alga Chondrus armatus, exhibit a pronounced inhibitory effect on the proliferation of human intestinal cancer tumor cells, without increasing the percentage of dead cells. Consequently, these carrageenans exhibit a pronounced antitumor effect blocking cell growth

Molekulyarnaya Meditsina (Molecular medicine). 2022;20(1):46-52
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Genetic predictors of sporadic congenital heart defects in children

Shabaldin A.V., Tsepokina A.V., Shmulevich S.A., Ponasenko A.V.

Abstract

Background. Congenital heart defects can be embryopathies formed due to an imbalance in the processes of differentiation and proliferation in cardiac progenitor cells. One of the reasons for these disorders may be genetically restricted signaling, including that induced through Toll-like receptors (TLRs). Aim. To study the predictors in the TLRs genes for congenital heart defects. Material and methods. 80 children (39girls and 41 boys) with congenital heart defects requiring cardiac surgery were included in this study. The control group was formed from 96 healthy children. Four TLR genes were studied (TLR1 rs5743611, TLR1 rs5743551, TLR2 rs5743708, TLR2 rs3804099, TLR4 rs4986791, TLR4 rs4986790, TLR6 rs3775073 and TLR6 rs5743810). Genotyping was performed by real-time PCR using TaqMan probes. Results. This study showed that the combination of alleles in polymorphic sites of TLRs genes was statistically significant only for ventricular septal defects. The formation of ventricular septal defect is associated with homozygosity for the G allele in the TLR2 gene (rs5743708) and the T allele in the TLR6gene (rs3775073).

Molekulyarnaya Meditsina (Molecular medicine). 2022;20(1):53-58
pages 53-58 views

The role of some genetic polymorphisms of IL-10 in the development of varicella in military personnel

Krivolutskaya T.A., Emelyanova A.N., Emelyanov A.S., Vitkovsky Y.A.

Abstract

Introduction. Currently, scientists are paying increasing attention to the genetic condition of various pathologies. According to recent studies, cytokines play an essential role in the immune response in various pathological processes. The detection of genetic defects in the genes of anti-inflammatory cytokines may be accompanied by their various production and result in individual characteristics of the infectious process in carriers of polymorphic mutations. Objective of the study. To study the IL-10 gene polymorphic marker (G-1082A, C-819T) genotypes frequency in the uncomplicated course of chicken pox in conscripts of Zabaikalsky Krai. Methods. SNP genes were determined by PCR. When conducting statistical analysis, the authors were guided by the uniform requirements for manuscripts submitted to biomedical journals and the recommendations «Statistical analysis and methods in the published literature» (SAMPLE). Statistical processing of the research results was carried out using the IBM SPSS Statistics Version 25.0 software package (International Business Machines Corporation, Iicense No. Z125-3301-14, USA). Results. GA genotype of the IL-10 gene (G1082A) frequency in servicemen with chickenpox was 28 times higher compared to the healthy group (χ2=86.1, p=0.001). In turn, the GG genotype of the IL-10 gene (G1082A) was detected 3.5 times more often in healthy individuals than in patients with chickenpox (χ2=86.1, p=0.001). CT genotype of the IL-10 gene (C819T) frequency in servicemen with chickenpox was 2.4 times higher compared to the healthy group (χ2=24.0, p=0.001). In turn, the CC genotype of the IL-10 gene (C819T) was detected 2.0 times more often than in patients with chickenpox (χ2=24.0, p=0.001). Conclusion. The prevalence of genotypes GA IL-10 (G1082A) and CT of the IL-10 gene (C819T) is higher in conscripted servicemen in the Trans-Baikal Territory, which allows us to conclude that there is an association of these polymorphisms with the incidence of chickenpox. Also, according to the results, it can be assumed that the genotypes GG IL-10 (G1082A) and C of the IL-10 gene (C819T) are a protector association of polymorphisms from the incidence of chickenpox.

Molekulyarnaya Meditsina (Molecular medicine). 2022;20(1):59-64
pages 59-64 views

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